Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24362 | 3' | -54.8 | NC_005264.1 | + | 160122 | 0.66 | 0.956222 |
Target: 5'- cGCCUGGGggcagugcuGCAUUGCcAUCUGgcUGCAa- -3' miRNA: 3'- -CGGACCC---------CGUAGCGuUAGAU--GCGUcc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 158978 | 0.71 | 0.761673 |
Target: 5'- aCgUGGGGCAgCcCAAUCcccgGCGCAGGa -3' miRNA: 3'- cGgACCCCGUaGcGUUAGa---UGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 158514 | 0.66 | 0.952292 |
Target: 5'- cGCCaGGGGCAggccugCGCugugGUggACGcCAGGg -3' miRNA: 3'- -CGGaCCCCGUa-----GCGu---UAgaUGC-GUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 156278 | 0.67 | 0.923793 |
Target: 5'- cGCCUcGGuGGUgGUCGCGGUgaaCU-CGCAGGg -3' miRNA: 3'- -CGGA-CC-CCG-UAGCGUUA---GAuGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 154947 | 0.68 | 0.900026 |
Target: 5'- aGCgUGGGGgaCGUCGUAcgC-GCGCAGa -3' miRNA: 3'- -CGgACCCC--GUAGCGUuaGaUGCGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 143467 | 0.66 | 0.955839 |
Target: 5'- uGCCcgUGGGGCAUugggUGCGacuuggaccaaacGUCUGCcuCAGGg -3' miRNA: 3'- -CGG--ACCCCGUA----GCGU-------------UAGAUGc-GUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 137852 | 0.66 | 0.934244 |
Target: 5'- aGCCgcagGGGGUAcggggacaacCGCAgGUCU-CGCGGGa -3' miRNA: 3'- -CGGa---CCCCGUa---------GCGU-UAGAuGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 137431 | 0.66 | 0.94374 |
Target: 5'- cGCCUGGcGCA-CGagauagCUGCGCAGa -3' miRNA: 3'- -CGGACCcCGUaGCguua--GAUGCGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 136951 | 1.14 | 0.001999 |
Target: 5'- cGCCUGGGGCAUCGCAAUCUACGCAGGg -3' miRNA: 3'- -CGGACCCCGUAGCGUUAGAUGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 133746 | 0.67 | 0.929139 |
Target: 5'- gGCgCUGGGaGCcuauaCGCAgacAUCUACGCcgAGGa -3' miRNA: 3'- -CG-GACCC-CGua---GCGU---UAGAUGCG--UCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 132626 | 0.66 | 0.948133 |
Target: 5'- -aCgGGaccGGCgAUCGCGGUCgggACGCGGGc -3' miRNA: 3'- cgGaCC---CCG-UAGCGUUAGa--UGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 131460 | 0.68 | 0.879753 |
Target: 5'- uGCUUGGaGGCGcggUGCGGUCUAaaggcccgGCAGGc -3' miRNA: 3'- -CGGACC-CCGUa--GCGUUAGAUg-------CGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 128930 | 0.66 | 0.94374 |
Target: 5'- cCCUGGcGGCAgaaaggcggCGCuAUCUcGCGCuAGGu -3' miRNA: 3'- cGGACC-CCGUa--------GCGuUAGA-UGCG-UCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 128309 | 0.68 | 0.900026 |
Target: 5'- uUCUGGGGCAguuuggUGCGGUCgaagGCGUAu- -3' miRNA: 3'- cGGACCCCGUa-----GCGUUAGa---UGCGUcc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 124135 | 0.71 | 0.761673 |
Target: 5'- cGCCUgGGGGCGagcUGgGAcCUACGUAGGa -3' miRNA: 3'- -CGGA-CCCCGUa--GCgUUaGAUGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 117417 | 0.7 | 0.798742 |
Target: 5'- cGCUaucGGGGCuGUCGCGGc--GCGCAGGg -3' miRNA: 3'- -CGGa--CCCCG-UAGCGUUagaUGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 117001 | 0.66 | 0.952292 |
Target: 5'- uCUUGGGG----GCGGUCUGCGCGGc -3' miRNA: 3'- cGGACCCCguagCGUUAGAUGCGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 116503 | 0.68 | 0.865125 |
Target: 5'- uCCUGGaaucGGCAaaacuacuUCGCGGUCUuCGguGGg -3' miRNA: 3'- cGGACC----CCGU--------AGCGUUAGAuGCguCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 108893 | 0.67 | 0.906323 |
Target: 5'- cGCCaUGuGGuGCG-CGCGGUCUaACGCGGa -3' miRNA: 3'- -CGG-AC-CC-CGUaGCGUUAGA-UGCGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 103479 | 0.7 | 0.807653 |
Target: 5'- gGCCaUGGGucGCGUgCGCAGUCUgauccGCGaCAGGc -3' miRNA: 3'- -CGG-ACCC--CGUA-GCGUUAGA-----UGC-GUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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