Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24362 | 3' | -54.8 | NC_005264.1 | + | 66261 | 0.66 | 0.94374 |
Target: 5'- uGCCa-GGGCcagAUCGCGcUCUGCGUcGGa -3' miRNA: 3'- -CGGacCCCG---UAGCGUuAGAUGCGuCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 67778 | 0.66 | 0.94374 |
Target: 5'- gGCUUGGGGUcgagaAagGCAGUCaguaucGCGCAGa -3' miRNA: 3'- -CGGACCCCG-----UagCGUUAGa-----UGCGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 68753 | 0.68 | 0.893496 |
Target: 5'- -gUUGGGGUcgC-CAGUC-ACGCGGGa -3' miRNA: 3'- cgGACCCCGuaGcGUUAGaUGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 69274 | 0.73 | 0.621278 |
Target: 5'- uGCCaUGGGGCG-CGCGAaacaaggagcUUUGCGCAGu -3' miRNA: 3'- -CGG-ACCCCGUaGCGUU----------AGAUGCGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 69853 | 0.79 | 0.351338 |
Target: 5'- uGCUUGGGGCAUCGCcc-CUACgGCGGa -3' miRNA: 3'- -CGGACCCCGUAGCGuuaGAUG-CGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 70502 | 0.7 | 0.780474 |
Target: 5'- cGUCUGGGaGCAagaUGCGGUCUaugGCGCuGGa -3' miRNA: 3'- -CGGACCC-CGUa--GCGUUAGA---UGCGuCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 71718 | 0.69 | 0.841623 |
Target: 5'- cGCgUGGGGC--UGCAGUCgGC-CAGGa -3' miRNA: 3'- -CGgACCCCGuaGCGUUAGaUGcGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 75473 | 0.7 | 0.780474 |
Target: 5'- cGCCUGGGGUggccaGUCGCGcguugagaCUAC-CGGGg -3' miRNA: 3'- -CGGACCCCG-----UAGCGUua------GAUGcGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 79210 | 0.67 | 0.929139 |
Target: 5'- cCCUGGGGCuaggcugcgUGCAGgcgGCgGCGGGg -3' miRNA: 3'- cGGACCCCGua-------GCGUUagaUG-CGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 79700 | 0.66 | 0.952292 |
Target: 5'- -----cGGCGUCGCuaGAUCUaACGCAGGc -3' miRNA: 3'- cggaccCCGUAGCG--UUAGA-UGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 88227 | 0.68 | 0.893496 |
Target: 5'- cGCCaGGGGgAaCGUggGGUCagGCGCGGGg -3' miRNA: 3'- -CGGaCCCCgUaGCG--UUAGa-UGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 89830 | 0.68 | 0.886737 |
Target: 5'- cGCCgUGGGGCGccaggaGCuuUCUGCGguGu -3' miRNA: 3'- -CGG-ACCCCGUag----CGuuAGAUGCguCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 96994 | 0.67 | 0.912384 |
Target: 5'- cGCgUGGGaagggcGUAUCGUuAUCU-CGCGGGa -3' miRNA: 3'- -CGgACCC------CGUAGCGuUAGAuGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 97829 | 0.68 | 0.865125 |
Target: 5'- aGUCUgacGGGGUucAUCGCGGaCUACGUAGa -3' miRNA: 3'- -CGGA---CCCCG--UAGCGUUaGAUGCGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 98514 | 0.68 | 0.879753 |
Target: 5'- cGCCgacggGGGGCcu--CAGUCUugGCAGcGg -3' miRNA: 3'- -CGGa----CCCCGuagcGUUAGAugCGUC-C- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 100077 | 0.67 | 0.929139 |
Target: 5'- gGCCUaGGGCGUaGCAuggCggcCGCGGGg -3' miRNA: 3'- -CGGAcCCCGUAgCGUua-Gau-GCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 103479 | 0.7 | 0.807653 |
Target: 5'- gGCCaUGGGucGCGUgCGCAGUCUgauccGCGaCAGGc -3' miRNA: 3'- -CGG-ACCC--CGUA-GCGUUAGA-----UGC-GUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 108893 | 0.67 | 0.906323 |
Target: 5'- cGCCaUGuGGuGCG-CGCGGUCUaACGCGGa -3' miRNA: 3'- -CGG-AC-CC-CGUaGCGUUAGA-UGCGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 116503 | 0.68 | 0.865125 |
Target: 5'- uCCUGGaaucGGCAaaacuacuUCGCGGUCUuCGguGGg -3' miRNA: 3'- cGGACC----CCGU--------AGCGUUAGAuGCguCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 117001 | 0.66 | 0.952292 |
Target: 5'- uCUUGGGG----GCGGUCUGCGCGGc -3' miRNA: 3'- cGGACCCCguagCGUUAGAUGCGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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