Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24362 | 3' | -54.8 | NC_005264.1 | + | 160122 | 0.66 | 0.956222 |
Target: 5'- cGCCUGGGggcagugcuGCAUUGCcAUCUGgcUGCAa- -3' miRNA: 3'- -CGGACCC---------CGUAGCGuUAGAU--GCGUcc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 44879 | 0.72 | 0.662237 |
Target: 5'- aGCCUGGGGaggcgggccCGUCGUcGUCUgGgGCGGGa -3' miRNA: 3'- -CGGACCCC---------GUAGCGuUAGA-UgCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 12433 | 0.68 | 0.879753 |
Target: 5'- uGCUUGGaGGCGcggUGCGGUCUAaaggcccgGCAGGc -3' miRNA: 3'- -CGGACC-CCGUa--GCGUUAGAUg-------CGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 16126 | 0.8 | 0.292067 |
Target: 5'- aGCUUGGGGCAgaaUCGUcguucucAAUCUcGCGCAGGg -3' miRNA: 3'- -CGGACCCCGU---AGCG-------UUAGA-UGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 97829 | 0.68 | 0.865125 |
Target: 5'- aGUCUgacGGGGUucAUCGCGGaCUACGUAGa -3' miRNA: 3'- -CGGA---CCCCG--UAGCGUUaGAUGCGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 21115 | 0.72 | 0.682604 |
Target: 5'- uGCCagGGGGguUCGUGAUCacgaUACGCGGcGg -3' miRNA: 3'- -CGGa-CCCCguAGCGUUAG----AUGCGUC-C- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 136951 | 1.14 | 0.001999 |
Target: 5'- cGCCUGGGGCAUCGCAAUCUACGCAGGg -3' miRNA: 3'- -CGGACCCCGUAGCGUUAGAUGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 46259 | 0.7 | 0.816406 |
Target: 5'- cGCCUGgGGGCguuuagggGUCGCcgagCUGCGCAu- -3' miRNA: 3'- -CGGAC-CCCG--------UAGCGuua-GAUGCGUcc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 5108 | 0.71 | 0.761673 |
Target: 5'- cGCCUgGGGGCGagcUGgGAcCUACGUAGGa -3' miRNA: 3'- -CGGA-CCCCGUa--GCgUUaGAUGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 55369 | 0.72 | 0.662237 |
Target: 5'- aGCC-GGGccGCGUCgGCGGUCUACGCAa- -3' miRNA: 3'- -CGGaCCC--CGUAG-CGUUAGAUGCGUcc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 69274 | 0.73 | 0.621278 |
Target: 5'- uGCCaUGGGGCG-CGCGAaacaaggagcUUUGCGCAGu -3' miRNA: 3'- -CGG-ACCCCGUaGCGUU----------AGAUGCGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 98514 | 0.68 | 0.879753 |
Target: 5'- cGCCgacggGGGGCcu--CAGUCUugGCAGcGg -3' miRNA: 3'- -CGGa----CCCCGuagcGUUAGAugCGUC-C- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 48683 | 0.72 | 0.682604 |
Target: 5'- aUCUGGGcGCgagucugcucGUCGCGGUCgcuCGCGGGa -3' miRNA: 3'- cGGACCC-CG----------UAGCGUUAGau-GCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 158978 | 0.71 | 0.761673 |
Target: 5'- aCgUGGGGCAgCcCAAUCcccgGCGCAGGa -3' miRNA: 3'- cGgACCCCGUaGcGUUAGa---UGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 70502 | 0.7 | 0.780474 |
Target: 5'- cGUCUGGGaGCAagaUGCGGUCUaugGCGCuGGa -3' miRNA: 3'- -CGGACCC-CGUa--GCGUUAGA---UGCGuCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 75473 | 0.7 | 0.780474 |
Target: 5'- cGCCUGGGGUggccaGUCGCGcguugagaCUAC-CGGGg -3' miRNA: 3'- -CGGACCCCG-----UAGCGUua------GAUGcGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 128930 | 0.66 | 0.94374 |
Target: 5'- cCCUGGcGGCAgaaaggcggCGCuAUCUcGCGCuAGGu -3' miRNA: 3'- cGGACC-CCGUa--------GCGuUAGA-UGCG-UCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 116503 | 0.68 | 0.865125 |
Target: 5'- uCCUGGaaucGGCAaaacuacuUCGCGGUCUuCGguGGg -3' miRNA: 3'- cGGACC----CCGU--------AGCGUUAGAuGCguCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 66261 | 0.66 | 0.94374 |
Target: 5'- uGCCa-GGGCcagAUCGCGcUCUGCGUcGGa -3' miRNA: 3'- -CGGacCCCG---UAGCGUuAGAUGCGuCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 24919 | 0.66 | 0.94374 |
Target: 5'- -gCUGGGGUGaCGCGAUCUuauCGCccGGc -3' miRNA: 3'- cgGACCCCGUaGCGUUAGAu--GCGu-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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