miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24362 3' -54.8 NC_005264.1 + 79210 0.67 0.929139
Target:  5'- cCCUGGGGCuaggcugcgUGCAGgcgGCgGCGGGg -3'
miRNA:   3'- cGGACCCCGua-------GCGUUagaUG-CGUCC- -5'
24362 3' -54.8 NC_005264.1 + 156278 0.67 0.923793
Target:  5'- cGCCUcGGuGGUgGUCGCGGUgaaCU-CGCAGGg -3'
miRNA:   3'- -CGGA-CC-CCG-UAGCGUUA---GAuGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 31638 0.67 0.922143
Target:  5'- uGCCUcGGGGCuaggaggaauauguGaCGCGAaCUGCGCgAGGc -3'
miRNA:   3'- -CGGA-CCCCG--------------UaGCGUUaGAUGCG-UCC- -5'
24362 3' -54.8 NC_005264.1 + 28046 0.67 0.918208
Target:  5'- -aUUGGGGCGaggauUCGCGAUgUGCGCc-- -3'
miRNA:   3'- cgGACCCCGU-----AGCGUUAgAUGCGucc -5'
24362 3' -54.8 NC_005264.1 + 96994 0.67 0.912384
Target:  5'- cGCgUGGGaagggcGUAUCGUuAUCU-CGCGGGa -3'
miRNA:   3'- -CGgACCC------CGUAGCGuUAGAuGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 108893 0.67 0.906323
Target:  5'- cGCCaUGuGGuGCG-CGCGGUCUaACGCGGa -3'
miRNA:   3'- -CGG-AC-CC-CGUaGCGUUAGA-UGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 128309 0.68 0.900026
Target:  5'- uUCUGGGGCAguuuggUGCGGUCgaagGCGUAu- -3'
miRNA:   3'- cGGACCCCGUa-----GCGUUAGa---UGCGUcc -5'
24362 3' -54.8 NC_005264.1 + 154947 0.68 0.900026
Target:  5'- aGCgUGGGGgaCGUCGUAcgC-GCGCAGa -3'
miRNA:   3'- -CGgACCCC--GUAGCGUuaGaUGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 21505 0.68 0.893496
Target:  5'- aCgUGGGcaccgcCGUCGCAGUggGCGCAGGu -3'
miRNA:   3'- cGgACCCc-----GUAGCGUUAgaUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 88227 0.68 0.893496
Target:  5'- cGCCaGGGGgAaCGUggGGUCagGCGCGGGg -3'
miRNA:   3'- -CGGaCCCCgUaGCG--UUAGa-UGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 68753 0.68 0.893496
Target:  5'- -gUUGGGGUcgC-CAGUC-ACGCGGGa -3'
miRNA:   3'- cgGACCCCGuaGcGUUAGaUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 60434 0.68 0.893496
Target:  5'- ---cGGGGUAuuUUGCGAUC-GCGUAGGa -3'
miRNA:   3'- cggaCCCCGU--AGCGUUAGaUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 89830 0.68 0.886737
Target:  5'- cGCCgUGGGGCGccaggaGCuuUCUGCGguGu -3'
miRNA:   3'- -CGG-ACCCCGUag----CGuuAGAUGCguCc -5'
24362 3' -54.8 NC_005264.1 + 131460 0.68 0.879753
Target:  5'- uGCUUGGaGGCGcggUGCGGUCUAaaggcccgGCAGGc -3'
miRNA:   3'- -CGGACC-CCGUa--GCGUUAGAUg-------CGUCC- -5'
24362 3' -54.8 NC_005264.1 + 12433 0.68 0.879753
Target:  5'- uGCUUGGaGGCGcggUGCGGUCUAaaggcccgGCAGGc -3'
miRNA:   3'- -CGGACC-CCGUa--GCGUUAGAUg-------CGUCC- -5'
24362 3' -54.8 NC_005264.1 + 98514 0.68 0.879753
Target:  5'- cGCCgacggGGGGCcu--CAGUCUugGCAGcGg -3'
miRNA:   3'- -CGGa----CCCCGuagcGUUAGAugCGUC-C- -5'
24362 3' -54.8 NC_005264.1 + 97829 0.68 0.865125
Target:  5'- aGUCUgacGGGGUucAUCGCGGaCUACGUAGa -3'
miRNA:   3'- -CGGA---CCCCG--UAGCGUUaGAUGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 116503 0.68 0.865125
Target:  5'- uCCUGGaaucGGCAaaacuacuUCGCGGUCUuCGguGGg -3'
miRNA:   3'- cGGACC----CCGU--------AGCGUUAGAuGCguCC- -5'
24362 3' -54.8 NC_005264.1 + 71718 0.69 0.841623
Target:  5'- cGCgUGGGGC--UGCAGUCgGC-CAGGa -3'
miRNA:   3'- -CGgACCCCGuaGCGUUAGaUGcGUCC- -5'
24362 3' -54.8 NC_005264.1 + 46259 0.7 0.816406
Target:  5'- cGCCUGgGGGCguuuagggGUCGCcgagCUGCGCAu- -3'
miRNA:   3'- -CGGAC-CCCG--------UAGCGuua-GAUGCGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.