miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 3' -63.9 NC_005264.1 + 136194 1.04 0.001231
Target:  5'- gCGCGGCGCCGGCGCCGCGCUAAGGUUc -3'
miRNA:   3'- -GCGCCGCGGCCGCGGCGCGAUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 132589 0.68 0.447774
Target:  5'- aGCGGCGCgGGCGggaCCGgGgaAGGGc- -3'
miRNA:   3'- gCGCCGCGgCCGC---GGCgCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 131717 0.68 0.421282
Target:  5'- gCGCGGCguuGCUGGCGCUcuggcgcuacaauGCGCUAcGGc- -3'
miRNA:   3'- -GCGCCG---CGGCCGCGG-------------CGCGAUuCCaa -5'
24363 3' -63.9 NC_005264.1 + 131577 0.66 0.557917
Target:  5'- gCGCGGCaCCuGGCGCCuagGUGUgGAGGg- -3'
miRNA:   3'- -GCGCCGcGG-CCGCGG---CGCGaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 129499 0.66 0.567508
Target:  5'- gGCGGCGCagGGUuugGCgGCGCcgGAGGc- -3'
miRNA:   3'- gCGCCGCGg-CCG---CGgCGCGa-UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 128934 0.66 0.53888
Target:  5'- gGCGGCagaaaGgCGGCGCuaucuCGCGCU-AGGUUc -3'
miRNA:   3'- gCGCCG-----CgGCCGCG-----GCGCGAuUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 127842 0.69 0.40552
Target:  5'- cCGCGGCgGCCGGCggucuagaacccGgCGCGCgaaUGGGGUc -3'
miRNA:   3'- -GCGCCG-CGGCCG------------CgGCGCG---AUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 127404 0.67 0.465347
Target:  5'- -cCGGCGCCGGaCGCgGCGCguugAAGc-- -3'
miRNA:   3'- gcGCCGCGGCC-GCGgCGCGa---UUCcaa -5'
24363 3' -63.9 NC_005264.1 + 127348 0.69 0.381403
Target:  5'- cCGCGGCGUCGcCGUCGUcccCUAGGGUUu -3'
miRNA:   3'- -GCGCCGCGGCcGCGGCGc--GAUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 126897 0.77 0.11682
Target:  5'- gGCGGCGUCGGCGCCccagaugcgGCGUcgGAGGUc -3'
miRNA:   3'- gCGCCGCGGCCGCGG---------CGCGa-UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 126084 0.75 0.168817
Target:  5'- aGCGGCgacggcgccgGCCGGCGCCGuCGCgcugcggggaacUGAGGUUu -3'
miRNA:   3'- gCGCCG----------CGGCCGCGGC-GCG------------AUUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 125862 0.66 0.567508
Target:  5'- gGCGGCGacuaUGGCGCCaGCGCg------ -3'
miRNA:   3'- gCGCCGCg---GCCGCGG-CGCGauuccaa -5'
24363 3' -63.9 NC_005264.1 + 122575 0.71 0.301479
Target:  5'- aCGCaGCGCC-GCaCCGCGUUGGGGUa -3'
miRNA:   3'- -GCGcCGCGGcCGcGGCGCGAUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 122428 0.67 0.474267
Target:  5'- aCGCGGgGUCGGUGCgCGgGggAGGGa- -3'
miRNA:   3'- -GCGCCgCGGCCGCG-GCgCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 121911 0.7 0.336121
Target:  5'- cCGgGGCG-CGGCGCgGCGggGAGGg- -3'
miRNA:   3'- -GCgCCGCgGCCGCGgCGCgaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 120734 0.67 0.474267
Target:  5'- gGaCGGUGCCGGCGaCUGCGaCgacAGGGa- -3'
miRNA:   3'- gC-GCCGCGGCCGC-GGCGC-Ga--UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 120075 0.66 0.557917
Target:  5'- gGCGGaCGCCGGCuagcgggaGUCGUGCccaccGGGUg -3'
miRNA:   3'- gCGCC-GCGGCCG--------CGGCGCGau---UCCAa -5'
24363 3' -63.9 NC_005264.1 + 118058 0.68 0.421282
Target:  5'- cCGCGGCGUCGGCaacgaucGCCGCGggcacCUuuGGg- -3'
miRNA:   3'- -GCGCCGCGGCCG-------CGGCGC-----GAuuCCaa -5'
24363 3' -63.9 NC_005264.1 + 113256 0.69 0.397374
Target:  5'- -cUGGuCGCCGGCGgCGUGCgccgagAAGGUg -3'
miRNA:   3'- gcGCC-GCGGCCGCgGCGCGa-----UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 112988 0.67 0.483272
Target:  5'- gCGCGGCGucaccagggccCCGGUGCCGUGUUuu-GUUg -3'
miRNA:   3'- -GCGCCGC-----------GGCCGCGGCGCGAuucCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.