miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 5' -47.5 NC_005264.1 + 136228 1.12 0.010901
Target:  5'- gUUAACCUUCAUAGCAGCGGCUUUAGCg -3'
miRNA:   3'- -AAUUGGAAGUAUCGUCGCCGAAAUCG- -5'
24363 5' -47.5 NC_005264.1 + 74845 0.75 0.865525
Target:  5'- -cGACaUUCGUAGCGGCGGCacUGGUu -3'
miRNA:   3'- aaUUGgAAGUAUCGUCGCCGaaAUCG- -5'
24363 5' -47.5 NC_005264.1 + 21747 0.74 0.909619
Target:  5'- -gGGCCUUC--GGCGGCGGCcgucuugAGCg -3'
miRNA:   3'- aaUUGGAAGuaUCGUCGCCGaaa----UCG- -5'
24363 5' -47.5 NC_005264.1 + 34325 0.72 0.957235
Target:  5'- --cGCCUUCGaGGCGGCGGUgauguGCc -3'
miRNA:   3'- aauUGGAAGUaUCGUCGCCGaaau-CG- -5'
24363 5' -47.5 NC_005264.1 + 125112 0.71 0.971434
Target:  5'- uUUGGCUcgcgUCGUAGCGGCGGCa----- -3'
miRNA:   3'- -AAUUGGa---AGUAUCGUCGCCGaaaucg -5'
24363 5' -47.5 NC_005264.1 + 6085 0.71 0.971434
Target:  5'- uUUGGCUcgcgUCGUAGCGGCGGCa----- -3'
miRNA:   3'- -AAUUGGa---AGUAUCGUCGCCGaaaucg -5'
24363 5' -47.5 NC_005264.1 + 154875 0.7 0.985873
Target:  5'- -gGACCUUCGUGGUGGCuGuCUUccagUAGCc -3'
miRNA:   3'- aaUUGGAAGUAUCGUCGcC-GAA----AUCG- -5'
24363 5' -47.5 NC_005264.1 + 35849 0.7 0.985873
Target:  5'- -gGACCUUCGUGGUGGCuGuCUUccagUAGCc -3'
miRNA:   3'- aaUUGGAAGUAUCGUCGcC-GAA----AUCG- -5'
24363 5' -47.5 NC_005264.1 + 98524 0.7 0.987598
Target:  5'- -gGGCCUcagUCuUGGCAGCGGCaac-GCg -3'
miRNA:   3'- aaUUGGA---AGuAUCGUCGCCGaaauCG- -5'
24363 5' -47.5 NC_005264.1 + 4282 0.7 0.989007
Target:  5'- -cGGCCUgCAUGGCuggccaguaagAGCGGCccuggagUUUAGCg -3'
miRNA:   3'- aaUUGGAaGUAUCG-----------UCGCCG-------AAAUCG- -5'
24363 5' -47.5 NC_005264.1 + 44964 0.69 0.990014
Target:  5'- ---cCCUUCGUGGUagAGCGGCgguacgaagagGGCg -3'
miRNA:   3'- aauuGGAAGUAUCG--UCGCCGaaa--------UCG- -5'
24363 5' -47.5 NC_005264.1 + 68466 0.69 0.991692
Target:  5'- -gGGCCUcCAcuaauauUGGCcaGGCGGCUgUAGCg -3'
miRNA:   3'- aaUUGGAaGU-------AUCG--UCGCCGAaAUCG- -5'
24363 5' -47.5 NC_005264.1 + 74448 0.69 0.991811
Target:  5'- gUUGAgCUUCGcgGGCAuGCGGCU--GGCc -3'
miRNA:   3'- -AAUUgGAAGUa-UCGU-CGCCGAaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 93004 0.69 0.99354
Target:  5'- -cGGCCguagcgggggcagUCAaGGCAGUGGCUagUGGCc -3'
miRNA:   3'- aaUUGGa------------AGUaUCGUCGCCGAa-AUCG- -5'
24363 5' -47.5 NC_005264.1 + 4276 0.69 0.993923
Target:  5'- -gAACCgcgg-GGCGGCGGCagagAGCa -3'
miRNA:   3'- aaUUGGaaguaUCGUCGCCGaaa-UCG- -5'
24363 5' -47.5 NC_005264.1 + 123303 0.69 0.993923
Target:  5'- -gAACCgcgg-GGCGGCGGCagagAGCa -3'
miRNA:   3'- aaUUGGaaguaUCGUCGCCGaaa-UCG- -5'
24363 5' -47.5 NC_005264.1 + 94663 0.69 0.994801
Target:  5'- -aAGCCcaaaCGUAGCcGCGGCg--GGCg -3'
miRNA:   3'- aaUUGGaa--GUAUCGuCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 100076 0.69 0.994801
Target:  5'- -gGGCCUagggCGUAGCauGGCGGCcgcggGGCu -3'
miRNA:   3'- aaUUGGAa---GUAUCG--UCGCCGaaa--UCG- -5'
24363 5' -47.5 NC_005264.1 + 104528 0.69 0.994801
Target:  5'- ---cCCUUCGcgGGCAGCcGGCga-AGCg -3'
miRNA:   3'- aauuGGAAGUa-UCGUCG-CCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 17352 0.68 0.995573
Target:  5'- --uGCCUUCcgcGGCAGCuGGCggcGGCg -3'
miRNA:   3'- aauUGGAAGua-UCGUCG-CCGaaaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.