Results 1 - 20 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 118506 | 0.66 | 0.999181 |
Target: 5'- --cACCUcCAUAGuCGGCGGUUcu-GCg -3' miRNA: 3'- aauUGGAaGUAUC-GUCGCCGAaauCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 32682 | 0.68 | 0.997788 |
Target: 5'- -gAACUcUgGUGGCGGCcaGGCuUUUAGCg -3' miRNA: 3'- aaUUGGaAgUAUCGUCG--CCG-AAAUCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 138591 | 0.67 | 0.998165 |
Target: 5'- gUUGACUUcCGcGGCAGCGGUgg-GGUg -3' miRNA: 3'- -AAUUGGAaGUaUCGUCGCCGaaaUCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 93579 | 0.67 | 0.998165 |
Target: 5'- --cGCCc-CAUGGCAGCGGaugaGGCg -3' miRNA: 3'- aauUGGaaGUAUCGUCGCCgaaaUCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 3984 | 0.67 | 0.998487 |
Target: 5'- gUUAGCCgcuucGGCGGCGGCg--GGUu -3' miRNA: 3'- -AAUUGGaaguaUCGUCGCCGaaaUCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 96448 | 0.67 | 0.998487 |
Target: 5'- -cAACCUUg--AGCcuAGCGGCUUccAGCg -3' miRNA: 3'- aaUUGGAAguaUCG--UCGCCGAAa-UCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 62593 | 0.67 | 0.998601 |
Target: 5'- aUUGACCgcgCGaAGUAGCGGCgcggacguuccgAGCa -3' miRNA: 3'- -AAUUGGaa-GUaUCGUCGCCGaaa---------UCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 9542 | 0.67 | 0.998989 |
Target: 5'- --uGCCUUUGUcgcucgcagccGGUGGCGGCU--AGCa -3' miRNA: 3'- aauUGGAAGUA-----------UCGUCGCCGAaaUCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 30399 | 0.67 | 0.998989 |
Target: 5'- -aGGCCUUgacgccggcgagCGUAGCGuuguacagccGCGGCUUgUAGCu -3' miRNA: 3'- aaUUGGAA------------GUAUCGU----------CGCCGAA-AUCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 57471 | 0.68 | 0.996838 |
Target: 5'- --cGCCUguuuUCcUGGCGGCGGC---GGCg -3' miRNA: 3'- aauUGGA----AGuAUCGUCGCCGaaaUCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 124836 | 0.68 | 0.995573 |
Target: 5'- -cGGCgUUCaAUAGUccGGCGGCggUGGCc -3' miRNA: 3'- aaUUGgAAG-UAUCG--UCGCCGaaAUCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 124305 | 0.68 | 0.995573 |
Target: 5'- -cGGCCggaCGgcggGGCGGCGGCUgacccguggGGCg -3' miRNA: 3'- aaUUGGaa-GUa---UCGUCGCCGAaa-------UCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 34325 | 0.72 | 0.957235 |
Target: 5'- --cGCCUUCGaGGCGGCGGUgauguGCc -3' miRNA: 3'- aauUGGAAGUaUCGUCGCCGaaau-CG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 125112 | 0.71 | 0.971434 |
Target: 5'- uUUGGCUcgcgUCGUAGCGGCGGCa----- -3' miRNA: 3'- -AAUUGGa---AGUAUCGUCGCCGaaaucg -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 154875 | 0.7 | 0.985873 |
Target: 5'- -gGACCUUCGUGGUGGCuGuCUUccagUAGCc -3' miRNA: 3'- aaUUGGAAGUAUCGUCGcC-GAA----AUCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 4282 | 0.7 | 0.989007 |
Target: 5'- -cGGCCUgCAUGGCuggccaguaagAGCGGCccuggagUUUAGCg -3' miRNA: 3'- aaUUGGAaGUAUCG-----------UCGCCG-------AAAUCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 93004 | 0.69 | 0.99354 |
Target: 5'- -cGGCCguagcgggggcagUCAaGGCAGUGGCUagUGGCc -3' miRNA: 3'- aaUUGGa------------AGUaUCGUCGCCGAa-AUCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 123303 | 0.69 | 0.993923 |
Target: 5'- -gAACCgcgg-GGCGGCGGCagagAGCa -3' miRNA: 3'- aaUUGGaaguaUCGUCGCCGaaa-UCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 94663 | 0.69 | 0.994801 |
Target: 5'- -aAGCCcaaaCGUAGCcGCGGCg--GGCg -3' miRNA: 3'- aaUUGGaa--GUAUCGuCGCCGaaaUCG- -5' |
|||||||
24363 | 5' | -47.5 | NC_005264.1 | + | 17352 | 0.68 | 0.995573 |
Target: 5'- --uGCCUUCcgcGGCAGCuGGCggcGGCg -3' miRNA: 3'- aauUGGAAGua-UCGUCG-CCGaaaUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home