miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 5' -47.5 NC_005264.1 + 810 0.66 0.999582
Target:  5'- -cGGCUgg-GUGcGCGGcCGGCUUUAGCc -3'
miRNA:   3'- aaUUGGaagUAU-CGUC-GCCGAAAUCG- -5'
24363 5' -47.5 NC_005264.1 + 3984 0.67 0.998487
Target:  5'- gUUAGCCgcuucGGCGGCGGCg--GGUu -3'
miRNA:   3'- -AAUUGGaaguaUCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 4276 0.69 0.993923
Target:  5'- -gAACCgcgg-GGCGGCGGCagagAGCa -3'
miRNA:   3'- aaUUGGaaguaUCGUCGCCGaaa-UCG- -5'
24363 5' -47.5 NC_005264.1 + 4282 0.7 0.989007
Target:  5'- -cGGCCUgCAUGGCuggccaguaagAGCGGCccuggagUUUAGCg -3'
miRNA:   3'- aaUUGGAaGUAUCG-----------UCGCCG-------AAAUCG- -5'
24363 5' -47.5 NC_005264.1 + 4424 0.66 0.999582
Target:  5'- -gAACCUcccUCAuUAGUgacgGGCGGCg--GGCa -3'
miRNA:   3'- aaUUGGA---AGU-AUCG----UCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 5278 0.68 0.995573
Target:  5'- -cGGCCggaCGgcggGGCGGCGGCUgacccguggGGCg -3'
miRNA:   3'- aaUUGGaa-GUa---UCGUCGCCGAaa-------UCG- -5'
24363 5' -47.5 NC_005264.1 + 5810 0.68 0.995573
Target:  5'- -cGGCgUUCaAUAGUccGGCGGCggUGGCc -3'
miRNA:   3'- aaUUGgAAG-UAUCG--UCGCCGaaAUCG- -5'
24363 5' -47.5 NC_005264.1 + 6085 0.71 0.971434
Target:  5'- uUUGGCUcgcgUCGUAGCGGCGGCa----- -3'
miRNA:   3'- -AAUUGGa---AGUAUCGUCGCCGaaaucg -5'
24363 5' -47.5 NC_005264.1 + 9542 0.67 0.998989
Target:  5'- --uGCCUUUGUcgcucgcagccGGUGGCGGCU--AGCa -3'
miRNA:   3'- aauUGGAAGUA-----------UCGUCGCCGAaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 9892 0.66 0.999473
Target:  5'- -cGGCCUUCccAGCccuGGCGGCagaaaGGCg -3'
miRNA:   3'- aaUUGGAAGuaUCG---UCGCCGaaa--UCG- -5'
24363 5' -47.5 NC_005264.1 + 16868 0.67 0.998989
Target:  5'- gUUGACCUUgucGGCGGCGGCa----- -3'
miRNA:   3'- -AAUUGGAAguaUCGUCGCCGaaaucg -5'
24363 5' -47.5 NC_005264.1 + 17352 0.68 0.995573
Target:  5'- --uGCCUUCcgcGGCAGCuGGCggcGGCg -3'
miRNA:   3'- aauUGGAAGua-UCGUCG-CCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 18043 0.66 0.99967
Target:  5'- --uGCCgacgCGaAGCGGCGGCgccgcgAGCc -3'
miRNA:   3'- aauUGGaa--GUaUCGUCGCCGaaa---UCG- -5'
24363 5' -47.5 NC_005264.1 + 21747 0.74 0.909619
Target:  5'- -gGGCCUUC--GGCGGCGGCcgucuugAGCg -3'
miRNA:   3'- aaUUGGAAGuaUCGUCGCCGaaa----UCG- -5'
24363 5' -47.5 NC_005264.1 + 25610 0.66 0.999473
Target:  5'- -gGGCCggCGUugcggaacacGGCGGCGGUgg-GGCc -3'
miRNA:   3'- aaUUGGaaGUA----------UCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 26947 0.66 0.999341
Target:  5'- gUAGCgCgugcgCAUcGCAGUGGCU-UGGCg -3'
miRNA:   3'- aAUUG-Gaa---GUAuCGUCGCCGAaAUCG- -5'
24363 5' -47.5 NC_005264.1 + 30399 0.67 0.998989
Target:  5'- -aGGCCUUgacgccggcgagCGUAGCGuuguacagccGCGGCUUgUAGCu -3'
miRNA:   3'- aaUUGGAA------------GUAUCGU----------CGCCGAA-AUCG- -5'
24363 5' -47.5 NC_005264.1 + 32682 0.68 0.997788
Target:  5'- -gAACUcUgGUGGCGGCcaGGCuUUUAGCg -3'
miRNA:   3'- aaUUGGaAgUAUCGUCG--CCG-AAAUCG- -5'
24363 5' -47.5 NC_005264.1 + 34325 0.72 0.957235
Target:  5'- --cGCCUUCGaGGCGGCGGUgauguGCc -3'
miRNA:   3'- aauUGGAAGUaUCGUCGCCGaaau-CG- -5'
24363 5' -47.5 NC_005264.1 + 35849 0.7 0.985873
Target:  5'- -gGACCUUCGUGGUGGCuGuCUUccagUAGCc -3'
miRNA:   3'- aaUUGGAAGUAUCGUCGcC-GAA----AUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.