miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 5' -47.5 NC_005264.1 + 157245 0.66 0.999582
Target:  5'- ---gUCUUCGUGGCGGCccucGGCgcgUUGGa -3'
miRNA:   3'- aauuGGAAGUAUCGUCG----CCGa--AAUCg -5'
24363 5' -47.5 NC_005264.1 + 103709 0.68 0.997788
Target:  5'- -gGGCCaguggAGCGGCGGCgc-GGCa -3'
miRNA:   3'- aaUUGGaaguaUCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 77201 0.68 0.996249
Target:  5'- -gGGCCaUCGcGGCcauuAGCGGCUgcAGCa -3'
miRNA:   3'- aaUUGGaAGUaUCG----UCGCCGAaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 136228 1.12 0.010901
Target:  5'- gUUAACCUUCAUAGCAGCGGCUUUAGCg -3'
miRNA:   3'- -AAUUGGAAGUAUCGUCGCCGAAAUCG- -5'
24363 5' -47.5 NC_005264.1 + 71618 0.66 0.999473
Target:  5'- --cACCggCGaGGCGGCGGCagagaUAGCc -3'
miRNA:   3'- aauUGGaaGUaUCGUCGCCGaa---AUCG- -5'
24363 5' -47.5 NC_005264.1 + 9892 0.66 0.999473
Target:  5'- -cGGCCUUCccAGCccuGGCGGCagaaaGGCg -3'
miRNA:   3'- aaUUGGAAGuaUCG---UCGCCGaaa--UCG- -5'
24363 5' -47.5 NC_005264.1 + 153599 0.66 0.999296
Target:  5'- -gAugCUUCAguacgaaacgcgcgUGGUAGCGGCgUUUcGCa -3'
miRNA:   3'- aaUugGAAGU--------------AUCGUCGCCG-AAAuCG- -5'
24363 5' -47.5 NC_005264.1 + 140776 0.66 0.999249
Target:  5'- --cGCCUUCc-GGCGGCGGCgcuaccguccaaGGCg -3'
miRNA:   3'- aauUGGAAGuaUCGUCGCCGaaa---------UCG- -5'
24363 5' -47.5 NC_005264.1 + 97530 0.67 0.998989
Target:  5'- -cGGCUguggCGUGGCAGCgGGCaagAGCc -3'
miRNA:   3'- aaUUGGaa--GUAUCGUCG-CCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 142213 0.67 0.998165
Target:  5'- gUAAUCUcgCGaGGCAGCGGUUgggucAGCa -3'
miRNA:   3'- aAUUGGAa-GUaUCGUCGCCGAaa---UCG- -5'
24363 5' -47.5 NC_005264.1 + 48389 0.67 0.998487
Target:  5'- -aGACUggggCGUcgGGCGGCGGCcaggAGCg -3'
miRNA:   3'- aaUUGGaa--GUA--UCGUCGCCGaaa-UCG- -5'
24363 5' -47.5 NC_005264.1 + 16868 0.67 0.998989
Target:  5'- gUUGACCUUgucGGCGGCGGCa----- -3'
miRNA:   3'- -AAUUGGAAguaUCGUCGCCGaaaucg -5'
24363 5' -47.5 NC_005264.1 + 74279 0.66 0.999582
Target:  5'- -gGGCC-UCAuauggcagcauUAGCGGCGGUc-UGGCg -3'
miRNA:   3'- aaUUGGaAGU-----------AUCGUCGCCGaaAUCG- -5'
24363 5' -47.5 NC_005264.1 + 134841 0.67 0.998487
Target:  5'- -cGACCUggaUCGaugGGCcGCGGCUacGGCg -3'
miRNA:   3'- aaUUGGA---AGUa--UCGuCGCCGAaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 39085 0.66 0.999582
Target:  5'- --cGCCggcUCGgcgGGCAGCGGCgucUGGa -3'
miRNA:   3'- aauUGGa--AGUa--UCGUCGCCGaa-AUCg -5'
24363 5' -47.5 NC_005264.1 + 96265 0.66 0.999181
Target:  5'- -gAGCCUguacCAgcaGGUGGCGGCgg-AGCu -3'
miRNA:   3'- aaUUGGAa---GUa--UCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 145968 0.67 0.998165
Target:  5'- -cGACCUUCGccggcgcgaaUAcgaacugcGCGGCGGCU--GGCg -3'
miRNA:   3'- aaUUGGAAGU----------AU--------CGUCGCCGAaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 129231 0.68 0.997788
Target:  5'- cUGGCCgaacuuUAGCGGCGGCa--AGCc -3'
miRNA:   3'- aAUUGGaagu--AUCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 25610 0.66 0.999473
Target:  5'- -gGGCCggCGUugcggaacacGGCGGCGGUgg-GGCc -3'
miRNA:   3'- aaUUGGaaGUA----------UCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 132902 0.66 0.999341
Target:  5'- gUUGACCggCuaggcGCAGCGGCguaccucccUAGCg -3'
miRNA:   3'- -AAUUGGaaGuau--CGUCGCCGaa-------AUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.