miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 5' -59.6 NC_005264.1 + 92083 0.67 0.749611
Target:  5'- uCACCGCGuuGUUGcCGcUUGCUCGCCUg- -3'
miRNA:   3'- -GUGGCGC--CAGCaGC-AGCGAGUGGGag -5'
24364 5' -59.6 NC_005264.1 + 124182 0.67 0.740263
Target:  5'- uCGCCGUcGUCGUCGgUGC-CGgCCUCg -3'
miRNA:   3'- -GUGGCGcCAGCAGCaGCGaGUgGGAG- -5'
24364 5' -59.6 NC_005264.1 + 5155 0.67 0.740263
Target:  5'- uCGCCGUcGUCGUCGgUGC-CGgCCUCg -3'
miRNA:   3'- -GUGGCGcCAGCAGCaGCGaGUgGGAG- -5'
24364 5' -59.6 NC_005264.1 + 95832 0.67 0.730828
Target:  5'- cCGCCGCuccguccaGGcagcacUCGcCGUUGCUCGCCCa- -3'
miRNA:   3'- -GUGGCG--------CC------AGCaGCAGCGAGUGGGag -5'
24364 5' -59.6 NC_005264.1 + 142857 0.67 0.721314
Target:  5'- gAgCGCGGUCGguuuguugCGUCGaCUCGCgCCg- -3'
miRNA:   3'- gUgGCGCCAGCa-------GCAGC-GAGUG-GGag -5'
24364 5' -59.6 NC_005264.1 + 7953 0.67 0.721314
Target:  5'- gGCCGCGG-CGUCuuuGUCGCU-GCCUa- -3'
miRNA:   3'- gUGGCGCCaGCAG---CAGCGAgUGGGag -5'
24364 5' -59.6 NC_005264.1 + 113473 0.67 0.71557
Target:  5'- -cCCGCGGUCGUgccacgGUCGCgcgagugccaaccgCgACCCUCg -3'
miRNA:   3'- guGGCGCCAGCAg-----CAGCGa-------------G-UGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 118056 0.67 0.711728
Target:  5'- gACCGCGG-CGUCGgcaacgaucgcCGCgggCACCUUUg -3'
miRNA:   3'- gUGGCGCCaGCAGCa----------GCGa--GUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 51093 0.68 0.702079
Target:  5'- -uUCGCGGUCGcCGgugcugcggUCuGCUCGCgCCUCg -3'
miRNA:   3'- guGGCGCCAGCaGC---------AG-CGAGUG-GGAG- -5'
24364 5' -59.6 NC_005264.1 + 117512 0.68 0.702079
Target:  5'- gGgCGCGGcgCGUCugcgGUCGCUC-CCCUa -3'
miRNA:   3'- gUgGCGCCa-GCAG----CAGCGAGuGGGAg -5'
24364 5' -59.6 NC_005264.1 + 21987 0.68 0.682625
Target:  5'- gGCCGcCGGcUGUCGUCGcCUCuugauuuugGCCUUCg -3'
miRNA:   3'- gUGGC-GCCaGCAGCAGC-GAG---------UGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 62941 0.68 0.669893
Target:  5'- aACCGCGGUcucgCGUCGaCGCuuuagcguccggacUCGCCCa- -3'
miRNA:   3'- gUGGCGCCA----GCAGCaGCG--------------AGUGGGag -5'
24364 5' -59.6 NC_005264.1 + 3906 0.68 0.663016
Target:  5'- aCGCCGCauuGGUCGcUCGUugCGCUCuguauuagucuuGCCUUCg -3'
miRNA:   3'- -GUGGCG---CCAGC-AGCA--GCGAG------------UGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 82335 0.68 0.663016
Target:  5'- gCACCGCGG-CGaUGUU-CUCGCUCUCg -3'
miRNA:   3'- -GUGGCGCCaGCaGCAGcGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 134864 0.68 0.653173
Target:  5'- cUACgGCGGUCGUCGUCacGCguuuCCCa- -3'
miRNA:   3'- -GUGgCGCCAGCAGCAG--CGagu-GGGag -5'
24364 5' -59.6 NC_005264.1 + 6237 0.69 0.647259
Target:  5'- cCGCCGCGagacuugccgccuccGUCGcggUCGUCGC-CGCCgUCg -3'
miRNA:   3'- -GUGGCGC---------------CAGC---AGCAGCGaGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 125264 0.69 0.647259
Target:  5'- cCGCCGCGagacuugccgccuccGUCGcggUCGUCGC-CGCCgUCg -3'
miRNA:   3'- -GUGGCGC---------------CAGC---AGCAGCGaGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 18146 0.69 0.643314
Target:  5'- uGCCGUGGUCGcaacugUCGUCGUcggCGCCaCUg -3'
miRNA:   3'- gUGGCGCCAGC------AGCAGCGa--GUGG-GAg -5'
24364 5' -59.6 NC_005264.1 + 30451 0.69 0.643314
Target:  5'- aGCCGCGGgccccggcUCGgcccCGaCGUUCAUCCUCg -3'
miRNA:   3'- gUGGCGCC--------AGCa---GCaGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 149478 0.69 0.643314
Target:  5'- aGCCGCGGgccccggcUCGgcccCGaCGUUCAUCCUCg -3'
miRNA:   3'- gUGGCGCC--------AGCa---GCaGCGAGUGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.