Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24364 | 5' | -59.6 | NC_005264.1 | + | 114265 | 0.69 | 0.633447 |
Target: 5'- cCACCGCGaagcgCGUCGUgGCaUCAaugcccCCCUCg -3' miRNA: 3'- -GUGGCGCca---GCAGCAgCG-AGU------GGGAG- -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 114037 | 0.69 | 0.633447 |
Target: 5'- cCGCUGUGGgaaacgCGagGUCGUUCGCCC-Cg -3' miRNA: 3'- -GUGGCGCCa-----GCagCAGCGAGUGGGaG- -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 18146 | 0.69 | 0.643314 |
Target: 5'- uGCCGUGGUCGcaacugUCGUCGUcggCGCCaCUg -3' miRNA: 3'- gUGGCGCCAGC------AGCAGCGa--GUGG-GAg -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 30451 | 0.69 | 0.643314 |
Target: 5'- aGCCGCGGgccccggcUCGgcccCGaCGUUCAUCCUCg -3' miRNA: 3'- gUGGCGCC--------AGCa---GCaGCGAGUGGGAG- -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 149478 | 0.69 | 0.643314 |
Target: 5'- aGCCGCGGgccccggcUCGgcccCGaCGUUCAUCCUCg -3' miRNA: 3'- gUGGCGCC--------AGCa---GCaGCGAGUGGGAG- -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 6237 | 0.69 | 0.647259 |
Target: 5'- cCGCCGCGagacuugccgccuccGUCGcggUCGUCGC-CGCCgUCg -3' miRNA: 3'- -GUGGCGC---------------CAGC---AGCAGCGaGUGGgAG- -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 125264 | 0.69 | 0.647259 |
Target: 5'- cCGCCGCGagacuugccgccuccGUCGcggUCGUCGC-CGCCgUCg -3' miRNA: 3'- -GUGGCGC---------------CAGC---AGCAGCGaGUGGgAG- -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 134864 | 0.68 | 0.653173 |
Target: 5'- cUACgGCGGUCGUCGUCacGCguuuCCCa- -3' miRNA: 3'- -GUGgCGCCAGCAGCAG--CGagu-GGGag -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 82335 | 0.68 | 0.663016 |
Target: 5'- gCACCGCGG-CGaUGUU-CUCGCUCUCg -3' miRNA: 3'- -GUGGCGCCaGCaGCAGcGAGUGGGAG- -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 3906 | 0.68 | 0.663016 |
Target: 5'- aCGCCGCauuGGUCGcUCGUugCGCUCuguauuagucuuGCCUUCg -3' miRNA: 3'- -GUGGCG---CCAGC-AGCA--GCGAG------------UGGGAG- -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 62941 | 0.68 | 0.669893 |
Target: 5'- aACCGCGGUcucgCGUCGaCGCuuuagcguccggacUCGCCCa- -3' miRNA: 3'- gUGGCGCCA----GCAGCaGCG--------------AGUGGGag -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 21987 | 0.68 | 0.682625 |
Target: 5'- gGCCGcCGGcUGUCGUCGcCUCuugauuuugGCCUUCg -3' miRNA: 3'- gUGGC-GCCaGCAGCAGC-GAG---------UGGGAG- -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 51093 | 0.68 | 0.702079 |
Target: 5'- -uUCGCGGUCGcCGgugcugcggUCuGCUCGCgCCUCg -3' miRNA: 3'- guGGCGCCAGCaGC---------AG-CGAGUG-GGAG- -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 117512 | 0.68 | 0.702079 |
Target: 5'- gGgCGCGGcgCGUCugcgGUCGCUC-CCCUa -3' miRNA: 3'- gUgGCGCCa-GCAG----CAGCGAGuGGGAg -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 118056 | 0.67 | 0.711728 |
Target: 5'- gACCGCGG-CGUCGgcaacgaucgcCGCgggCACCUUUg -3' miRNA: 3'- gUGGCGCCaGCAGCa----------GCGa--GUGGGAG- -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 113473 | 0.67 | 0.71557 |
Target: 5'- -cCCGCGGUCGUgccacgGUCGCgcgagugccaaccgCgACCCUCg -3' miRNA: 3'- guGGCGCCAGCAg-----CAGCGa-------------G-UGGGAG- -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 7953 | 0.67 | 0.721314 |
Target: 5'- gGCCGCGG-CGUCuuuGUCGCU-GCCUa- -3' miRNA: 3'- gUGGCGCCaGCAG---CAGCGAgUGGGag -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 142857 | 0.67 | 0.721314 |
Target: 5'- gAgCGCGGUCGguuuguugCGUCGaCUCGCgCCg- -3' miRNA: 3'- gUgGCGCCAGCa-------GCAGC-GAGUG-GGag -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 95832 | 0.67 | 0.730828 |
Target: 5'- cCGCCGCuccguccaGGcagcacUCGcCGUUGCUCGCCCa- -3' miRNA: 3'- -GUGGCG--------CC------AGCaGCAGCGAGUGGGag -5' |
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24364 | 5' | -59.6 | NC_005264.1 | + | 5155 | 0.67 | 0.740263 |
Target: 5'- uCGCCGUcGUCGUCGgUGC-CGgCCUCg -3' miRNA: 3'- -GUGGCGcCAGCAGCaGCGaGUgGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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