miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 5' -59.6 NC_005264.1 + 134926 1.1 0.00148
Target:  5'- aCACCGCGGUCGUCGUCGCUCACCCUCg -3'
miRNA:   3'- -GUGGCGCCAGCAGCAGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 26728 0.74 0.346469
Target:  5'- -cCCGCGucguuauucGUCGUCGUCGCUCAUCgUUa -3'
miRNA:   3'- guGGCGC---------CAGCAGCAGCGAGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 69054 0.74 0.372483
Target:  5'- gGCCGCGGccgccgggcaggucaUCGUCGUCGCgCACCg-- -3'
miRNA:   3'- gUGGCGCC---------------AGCAGCAGCGaGUGGgag -5'
24364 5' -59.6 NC_005264.1 + 26437 0.73 0.393255
Target:  5'- gACCGCGGacgggCGUUGUCGgUCGCCaUCg -3'
miRNA:   3'- gUGGCGCCa----GCAGCAGCgAGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 80518 0.73 0.393255
Target:  5'- uCGCCGCGGUgcgcaaCGUCGUCGC-C-CCCa- -3'
miRNA:   3'- -GUGGCGCCA------GCAGCAGCGaGuGGGag -5'
24364 5' -59.6 NC_005264.1 + 54459 0.73 0.401441
Target:  5'- cCACCGCcgagcugguaagGGcCGUCGUCGCccaugUCAuCCCUCg -3'
miRNA:   3'- -GUGGCG------------CCaGCAGCAGCG-----AGU-GGGAG- -5'
24364 5' -59.6 NC_005264.1 + 96318 0.72 0.443951
Target:  5'- --aCGCGGUCGUCGUCaGggCACgCUCg -3'
miRNA:   3'- gugGCGCCAGCAGCAG-CgaGUGgGAG- -5'
24364 5' -59.6 NC_005264.1 + 146229 0.71 0.507437
Target:  5'- uCGCCGCGG-CGUCGUgGC--GCCCg- -3'
miRNA:   3'- -GUGGCGCCaGCAGCAgCGagUGGGag -5'
24364 5' -59.6 NC_005264.1 + 146371 0.71 0.526291
Target:  5'- cCACCGCGGcugCGUCGUCGgaacgaUgACCCa- -3'
miRNA:   3'- -GUGGCGCCa--GCAGCAGCg-----AgUGGGag -5'
24364 5' -59.6 NC_005264.1 + 24633 0.71 0.526291
Target:  5'- gACUGCGGUUGUCGUUugGC-CGCCUUg -3'
miRNA:   3'- gUGGCGCCAGCAGCAG--CGaGUGGGAg -5'
24364 5' -59.6 NC_005264.1 + 8318 0.7 0.555042
Target:  5'- gCGCCGCGG-CGUCGcCGUcgUC-CCCUa -3'
miRNA:   3'- -GUGGCGCCaGCAGCaGCG--AGuGGGAg -5'
24364 5' -59.6 NC_005264.1 + 127345 0.7 0.555042
Target:  5'- gCGCCGCGG-CGUCGcCGUcgUC-CCCUa -3'
miRNA:   3'- -GUGGCGCCaGCAGCaGCG--AGuGGGAg -5'
24364 5' -59.6 NC_005264.1 + 131648 0.7 0.564732
Target:  5'- gGCCGCaGcccccCGUCccacUCGCUCGCCCUCc -3'
miRNA:   3'- gUGGCGcCa----GCAGc---AGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 12621 0.7 0.564732
Target:  5'- gGCCGCaGcccccCGUCccacUCGCUCGCCCUCc -3'
miRNA:   3'- gUGGCGcCa----GCAGc---AGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 86599 0.69 0.59404
Target:  5'- gACaCGCGGUCGUCGcgccUCGCgacaGCCUUUc -3'
miRNA:   3'- gUG-GCGCCAGCAGC----AGCGag--UGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 48857 0.69 0.603869
Target:  5'- -uCCGCGGUCGugUCGUCGCUucugaCGCgCCg- -3'
miRNA:   3'- guGGCGCCAGC--AGCAGCGA-----GUG-GGag -5'
24364 5' -59.6 NC_005264.1 + 129449 0.69 0.62358
Target:  5'- uCACCGCGGUCGccaUCGccaaagCGCUaccaaACCCg- -3'
miRNA:   3'- -GUGGCGCCAGC---AGCa-----GCGAg----UGGGag -5'
24364 5' -59.6 NC_005264.1 + 117826 0.69 0.630487
Target:  5'- cCGCCGUccucGUCGcucUCGUCGCcguucucgccaggcUCGCCCUCu -3'
miRNA:   3'- -GUGGCGc---CAGC---AGCAGCG--------------AGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 114265 0.69 0.633447
Target:  5'- cCACCGCGaagcgCGUCGUgGCaUCAaugcccCCCUCg -3'
miRNA:   3'- -GUGGCGCca---GCAGCAgCG-AGU------GGGAG- -5'
24364 5' -59.6 NC_005264.1 + 114037 0.69 0.633447
Target:  5'- cCGCUGUGGgaaacgCGagGUCGUUCGCCC-Cg -3'
miRNA:   3'- -GUGGCGCCa-----GCagCAGCGAGUGGGaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.