miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 5' -59.6 NC_005264.1 + 117266 0.66 0.76801
Target:  5'- gACCGCGGUC-UCGU-GC-CACCUa- -3'
miRNA:   3'- gUGGCGCCAGcAGCAgCGaGUGGGag -5'
24364 5' -59.6 NC_005264.1 + 51093 0.68 0.702079
Target:  5'- -uUCGCGGUCGcCGgugcugcggUCuGCUCGCgCCUCg -3'
miRNA:   3'- guGGCGCCAGCaGC---------AG-CGAGUG-GGAG- -5'
24364 5' -59.6 NC_005264.1 + 117512 0.68 0.702079
Target:  5'- gGgCGCGGcgCGUCugcgGUCGCUC-CCCUa -3'
miRNA:   3'- gUgGCGCCa-GCAG----CAGCGAGuGGGAg -5'
24364 5' -59.6 NC_005264.1 + 118056 0.67 0.711728
Target:  5'- gACCGCGG-CGUCGgcaacgaucgcCGCgggCACCUUUg -3'
miRNA:   3'- gUGGCGCCaGCAGCa----------GCGa--GUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 113473 0.67 0.71557
Target:  5'- -cCCGCGGUCGUgccacgGUCGCgcgagugccaaccgCgACCCUCg -3'
miRNA:   3'- guGGCGCCAGCAg-----CAGCGa-------------G-UGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 7953 0.67 0.721314
Target:  5'- gGCCGCGG-CGUCuuuGUCGCU-GCCUa- -3'
miRNA:   3'- gUGGCGCCaGCAG---CAGCGAgUGGGag -5'
24364 5' -59.6 NC_005264.1 + 124182 0.67 0.740263
Target:  5'- uCGCCGUcGUCGUCGgUGC-CGgCCUCg -3'
miRNA:   3'- -GUGGCGcCAGCAGCaGCGaGUgGGAG- -5'
24364 5' -59.6 NC_005264.1 + 11658 0.67 0.749611
Target:  5'- gGCUGCuGUCGUCGUCGCgcaauUCgACCgUUa -3'
miRNA:   3'- gUGGCGcCAGCAGCAGCG-----AG-UGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 51954 0.66 0.7671
Target:  5'- uGCCGCuaacgCGUCGUgucggcgCGCUCACgCUCg -3'
miRNA:   3'- gUGGCGcca--GCAGCA-------GCGAGUGgGAG- -5'
24364 5' -59.6 NC_005264.1 + 3906 0.68 0.663016
Target:  5'- aCGCCGCauuGGUCGcUCGUugCGCUCuguauuagucuuGCCUUCg -3'
miRNA:   3'- -GUGGCG---CCAGC-AGCA--GCGAG------------UGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 82335 0.68 0.663016
Target:  5'- gCACCGCGG-CGaUGUU-CUCGCUCUCg -3'
miRNA:   3'- -GUGGCGCCaGCaGCAGcGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 125264 0.69 0.647259
Target:  5'- cCGCCGCGagacuugccgccuccGUCGcggUCGUCGC-CGCCgUCg -3'
miRNA:   3'- -GUGGCGC---------------CAGC---AGCAGCGaGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 24633 0.71 0.526291
Target:  5'- gACUGCGGUUGUCGUUugGC-CGCCUUg -3'
miRNA:   3'- gUGGCGCCAGCAGCAG--CGaGUGGGAg -5'
24364 5' -59.6 NC_005264.1 + 146371 0.71 0.526291
Target:  5'- cCACCGCGGcugCGUCGUCGgaacgaUgACCCa- -3'
miRNA:   3'- -GUGGCGCCa--GCAGCAGCg-----AgUGGGag -5'
24364 5' -59.6 NC_005264.1 + 127345 0.7 0.555042
Target:  5'- gCGCCGCGG-CGUCGcCGUcgUC-CCCUa -3'
miRNA:   3'- -GUGGCGCCaGCAGCaGCG--AGuGGGAg -5'
24364 5' -59.6 NC_005264.1 + 131648 0.7 0.564732
Target:  5'- gGCCGCaGcccccCGUCccacUCGCUCGCCCUCc -3'
miRNA:   3'- gUGGCGcCa----GCAGc---AGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 48857 0.69 0.603869
Target:  5'- -uCCGCGGUCGugUCGUCGCUucugaCGCgCCg- -3'
miRNA:   3'- guGGCGCCAGC--AGCAGCGA-----GUG-GGag -5'
24364 5' -59.6 NC_005264.1 + 117826 0.69 0.630487
Target:  5'- cCGCCGUccucGUCGcucUCGUCGCcguucucgccaggcUCGCCCUCu -3'
miRNA:   3'- -GUGGCGc---CAGC---AGCAGCG--------------AGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 32563 0.69 0.633447
Target:  5'- uGCCGCGGUagccgcCGcaaCGUCGCgCACCCg- -3'
miRNA:   3'- gUGGCGCCA------GCa--GCAGCGaGUGGGag -5'
24364 5' -59.6 NC_005264.1 + 149478 0.69 0.643314
Target:  5'- aGCCGCGGgccccggcUCGgcccCGaCGUUCAUCCUCg -3'
miRNA:   3'- gUGGCGCC--------AGCa---GCaGCGAGUGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.