miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 5' -59.6 NC_005264.1 + 27682 0.66 0.8119
Target:  5'- --aCGCGGcuggccucugccUCGcCGaCGCUCGCUCUCa -3'
miRNA:   3'- gugGCGCC------------AGCaGCaGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 114037 0.69 0.633447
Target:  5'- cCGCUGUGGgaaacgCGagGUCGUUCGCCC-Cg -3'
miRNA:   3'- -GUGGCGCCa-----GCagCAGCGAGUGGGaG- -5'
24364 5' -59.6 NC_005264.1 + 129449 0.69 0.62358
Target:  5'- uCACCGCGGUCGccaUCGccaaagCGCUaccaaACCCg- -3'
miRNA:   3'- -GUGGCGCCAGC---AGCa-----GCGAg----UGGGag -5'
24364 5' -59.6 NC_005264.1 + 134926 1.1 0.00148
Target:  5'- aCACCGCGGUCGUCGUCGCUCACCCUCg -3'
miRNA:   3'- -GUGGCGCCAGCAGCAGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 4806 0.66 0.78596
Target:  5'- aCGCCcUGGUccaucCGUCGUCGCUCugCa-- -3'
miRNA:   3'- -GUGGcGCCA-----GCAGCAGCGAGugGgag -5'
24364 5' -59.6 NC_005264.1 + 45589 0.66 0.777045
Target:  5'- gACCGCGGUC-UCGUucucCGCaUCGCCg-- -3'
miRNA:   3'- gUGGCGCCAGcAGCA----GCG-AGUGGgag -5'
24364 5' -59.6 NC_005264.1 + 5155 0.67 0.740263
Target:  5'- uCGCCGUcGUCGUCGgUGC-CGgCCUCg -3'
miRNA:   3'- -GUGGCGcCAGCAGCaGCGaGUgGGAG- -5'
24364 5' -59.6 NC_005264.1 + 95832 0.67 0.730828
Target:  5'- cCGCCGCuccguccaGGcagcacUCGcCGUUGCUCGCCCa- -3'
miRNA:   3'- -GUGGCG--------CC------AGCaGCAGCGAGUGGGag -5'
24364 5' -59.6 NC_005264.1 + 62941 0.68 0.669893
Target:  5'- aACCGCGGUcucgCGUCGaCGCuuuagcguccggacUCGCCCa- -3'
miRNA:   3'- gUGGCGCCA----GCAGCaGCG--------------AGUGGGag -5'
24364 5' -59.6 NC_005264.1 + 114265 0.69 0.633447
Target:  5'- cCACCGCGaagcgCGUCGUgGCaUCAaugcccCCCUCg -3'
miRNA:   3'- -GUGGCGCca---GCAGCAgCG-AGU------GGGAG- -5'
24364 5' -59.6 NC_005264.1 + 6237 0.69 0.647259
Target:  5'- cCGCCGCGagacuugccgccuccGUCGcggUCGUCGC-CGCCgUCg -3'
miRNA:   3'- -GUGGCGC---------------CAGC---AGCAGCGaGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 21987 0.68 0.682625
Target:  5'- gGCCGcCGGcUGUCGUCGcCUCuugauuuugGCCUUCg -3'
miRNA:   3'- gUGGC-GCCaGCAGCAGC-GAG---------UGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 83132 0.66 0.803395
Target:  5'- gGCCGCGGagG-CG-CGUcUGCCCUCa -3'
miRNA:   3'- gUGGCGCCagCaGCaGCGaGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 30451 0.69 0.643314
Target:  5'- aGCCGCGGgccccggcUCGgcccCGaCGUUCAUCCUCg -3'
miRNA:   3'- gUGGCGCC--------AGCa---GCaGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 13194 0.66 0.803395
Target:  5'- uGCgCGCGGaucCGUCGcCGC-CGCCgUCg -3'
miRNA:   3'- gUG-GCGCCa--GCAGCaGCGaGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 142857 0.67 0.721314
Target:  5'- gAgCGCGGUCGguuuguugCGUCGaCUCGCgCCg- -3'
miRNA:   3'- gUgGCGCCAGCa-------GCAGC-GAGUG-GGag -5'
24364 5' -59.6 NC_005264.1 + 18146 0.69 0.643314
Target:  5'- uGCCGUGGUCGcaacugUCGUCGUcggCGCCaCUg -3'
miRNA:   3'- gUGGCGCCAGC------AGCAGCGa--GUGG-GAg -5'
24364 5' -59.6 NC_005264.1 + 92437 0.69 0.633447
Target:  5'- aGCCGCacGGUC-UCGUCagGC-CGCCCUCc -3'
miRNA:   3'- gUGGCG--CCAGcAGCAG--CGaGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 3868 0.66 0.794746
Target:  5'- aGCCGaGGUCGcCGUgGCccCACCCg- -3'
miRNA:   3'- gUGGCgCCAGCaGCAgCGa-GUGGGag -5'
24364 5' -59.6 NC_005264.1 + 92083 0.67 0.749611
Target:  5'- uCACCGCGuuGUUGcCGcUUGCUCGCCUg- -3'
miRNA:   3'- -GUGGCGC--CAGCaGC-AGCGAGUGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.