miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 5' -59.6 NC_005264.1 + 3868 0.66 0.794746
Target:  5'- aGCCGaGGUCGcCGUgGCccCACCCg- -3'
miRNA:   3'- gUGGCgCCAGCaGCAgCGa-GUGGGag -5'
24364 5' -59.6 NC_005264.1 + 3906 0.68 0.663016
Target:  5'- aCGCCGCauuGGUCGcUCGUugCGCUCuguauuagucuuGCCUUCg -3'
miRNA:   3'- -GUGGCG---CCAGC-AGCA--GCGAG------------UGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 4806 0.66 0.78596
Target:  5'- aCGCCcUGGUccaucCGUCGUCGCUCugCa-- -3'
miRNA:   3'- -GUGGcGCCA-----GCAGCAGCGAGugGgag -5'
24364 5' -59.6 NC_005264.1 + 5155 0.67 0.740263
Target:  5'- uCGCCGUcGUCGUCGgUGC-CGgCCUCg -3'
miRNA:   3'- -GUGGCGcCAGCAGCaGCGaGUgGGAG- -5'
24364 5' -59.6 NC_005264.1 + 6237 0.69 0.647259
Target:  5'- cCGCCGCGagacuugccgccuccGUCGcggUCGUCGC-CGCCgUCg -3'
miRNA:   3'- -GUGGCGC---------------CAGC---AGCAGCGaGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 7953 0.67 0.721314
Target:  5'- gGCCGCGG-CGUCuuuGUCGCU-GCCUa- -3'
miRNA:   3'- gUGGCGCCaGCAG---CAGCGAgUGGGag -5'
24364 5' -59.6 NC_005264.1 + 8318 0.7 0.555042
Target:  5'- gCGCCGCGG-CGUCGcCGUcgUC-CCCUa -3'
miRNA:   3'- -GUGGCGCCaGCAGCaGCG--AGuGGGAg -5'
24364 5' -59.6 NC_005264.1 + 11658 0.67 0.749611
Target:  5'- gGCUGCuGUCGUCGUCGCgcaauUCgACCgUUa -3'
miRNA:   3'- gUGGCGcCAGCAGCAGCG-----AG-UGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 12621 0.7 0.564732
Target:  5'- gGCCGCaGcccccCGUCccacUCGCUCGCCCUCc -3'
miRNA:   3'- gUGGCGcCa----GCAGc---AGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 13194 0.66 0.803395
Target:  5'- uGCgCGCGGaucCGUCGcCGC-CGCCgUCg -3'
miRNA:   3'- gUG-GCGCCa--GCAGCaGCGaGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 18146 0.69 0.643314
Target:  5'- uGCCGUGGUCGcaacugUCGUCGUcggCGCCaCUg -3'
miRNA:   3'- gUGGCGCCAGC------AGCAGCGa--GUGG-GAg -5'
24364 5' -59.6 NC_005264.1 + 21987 0.68 0.682625
Target:  5'- gGCCGcCGGcUGUCGUCGcCUCuugauuuugGCCUUCg -3'
miRNA:   3'- gUGGC-GCCaGCAGCAGC-GAG---------UGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 24633 0.71 0.526291
Target:  5'- gACUGCGGUUGUCGUUugGC-CGCCUUg -3'
miRNA:   3'- gUGGCGCCAGCAGCAG--CGaGUGGGAg -5'
24364 5' -59.6 NC_005264.1 + 26437 0.73 0.393255
Target:  5'- gACCGCGGacgggCGUUGUCGgUCGCCaUCg -3'
miRNA:   3'- gUGGCGCCa----GCAGCAGCgAGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 26728 0.74 0.346469
Target:  5'- -cCCGCGucguuauucGUCGUCGUCGCUCAUCgUUa -3'
miRNA:   3'- guGGCGC---------CAGCAGCAGCGAGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 27682 0.66 0.8119
Target:  5'- --aCGCGGcuggccucugccUCGcCGaCGCUCGCUCUCa -3'
miRNA:   3'- gugGCGCC------------AGCaGCaGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 30451 0.69 0.643314
Target:  5'- aGCCGCGGgccccggcUCGgcccCGaCGUUCAUCCUCg -3'
miRNA:   3'- gUGGCGCC--------AGCa---GCaGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 32563 0.69 0.633447
Target:  5'- uGCCGCGGUagccgcCGcaaCGUCGCgCACCCg- -3'
miRNA:   3'- gUGGCGCCA------GCa--GCAGCGaGUGGGag -5'
24364 5' -59.6 NC_005264.1 + 45589 0.66 0.777045
Target:  5'- gACCGCGGUC-UCGUucucCGCaUCGCCg-- -3'
miRNA:   3'- gUGGCGCCAGcAGCA----GCG-AGUGGgag -5'
24364 5' -59.6 NC_005264.1 + 48857 0.69 0.603869
Target:  5'- -uCCGCGGUCGugUCGUCGCUucugaCGCgCCg- -3'
miRNA:   3'- guGGCGCCAGC--AGCAGCGA-----GUG-GGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.