miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 5' -59.6 NC_005264.1 + 149478 0.69 0.643314
Target:  5'- aGCCGCGGgccccggcUCGgcccCGaCGUUCAUCCUCg -3'
miRNA:   3'- gUGGCGCC--------AGCa---GCaGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 146371 0.71 0.526291
Target:  5'- cCACCGCGGcugCGUCGUCGgaacgaUgACCCa- -3'
miRNA:   3'- -GUGGCGCCa--GCAGCAGCg-----AgUGGGag -5'
24364 5' -59.6 NC_005264.1 + 146229 0.71 0.507437
Target:  5'- uCGCCGCGG-CGUCGUgGC--GCCCg- -3'
miRNA:   3'- -GUGGCGCCaGCAGCAgCGagUGGGag -5'
24364 5' -59.6 NC_005264.1 + 142857 0.67 0.721314
Target:  5'- gAgCGCGGUCGguuuguugCGUCGaCUCGCgCCg- -3'
miRNA:   3'- gUgGCGCCAGCa-------GCAGC-GAGUG-GGag -5'
24364 5' -59.6 NC_005264.1 + 134926 1.1 0.00148
Target:  5'- aCACCGCGGUCGUCGUCGCUCACCCUCg -3'
miRNA:   3'- -GUGGCGCCAGCAGCAGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 134864 0.68 0.653173
Target:  5'- cUACgGCGGUCGUCGUCacGCguuuCCCa- -3'
miRNA:   3'- -GUGgCGCCAGCAGCAG--CGagu-GGGag -5'
24364 5' -59.6 NC_005264.1 + 133691 0.66 0.784187
Target:  5'- uCGCCGCGGUCcUUGcCGCcgcgcacuggugCugCCUCu -3'
miRNA:   3'- -GUGGCGCCAGcAGCaGCGa-----------GugGGAG- -5'
24364 5' -59.6 NC_005264.1 + 132221 0.66 0.803395
Target:  5'- uGCgCGCGGaucCGUCGcCGC-CGCCgUCg -3'
miRNA:   3'- gUG-GCGCCa--GCAGCaGCGaGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 131648 0.7 0.564732
Target:  5'- gGCCGCaGcccccCGUCccacUCGCUCGCCCUCc -3'
miRNA:   3'- gUGGCGcCa----GCAGc---AGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 129449 0.69 0.62358
Target:  5'- uCACCGCGGUCGccaUCGccaaagCGCUaccaaACCCg- -3'
miRNA:   3'- -GUGGCGCCAGC---AGCa-----GCGAg----UGGGag -5'
24364 5' -59.6 NC_005264.1 + 127345 0.7 0.555042
Target:  5'- gCGCCGCGG-CGUCGcCGUcgUC-CCCUa -3'
miRNA:   3'- -GUGGCGCCaGCAGCaGCG--AGuGGGAg -5'
24364 5' -59.6 NC_005264.1 + 125264 0.69 0.647259
Target:  5'- cCGCCGCGagacuugccgccuccGUCGcggUCGUCGC-CGCCgUCg -3'
miRNA:   3'- -GUGGCGC---------------CAGC---AGCAGCGaGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 124182 0.67 0.740263
Target:  5'- uCGCCGUcGUCGUCGgUGC-CGgCCUCg -3'
miRNA:   3'- -GUGGCGcCAGCAGCaGCGaGUgGGAG- -5'
24364 5' -59.6 NC_005264.1 + 123832 0.66 0.78596
Target:  5'- aCGCCcUGGUccaucCGUCGUCGCUCugCa-- -3'
miRNA:   3'- -GUGGcGCCA-----GCAGCAGCGAGugGgag -5'
24364 5' -59.6 NC_005264.1 + 122894 0.66 0.794746
Target:  5'- aGCCGaGGUCGcCGUgGCccCACCCg- -3'
miRNA:   3'- gUGGCgCCAGCaGCAgCGa-GUGGGag -5'
24364 5' -59.6 NC_005264.1 + 118056 0.67 0.711728
Target:  5'- gACCGCGG-CGUCGgcaacgaucgcCGCgggCACCUUUg -3'
miRNA:   3'- gUGGCGCCaGCAGCa----------GCGa--GUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 117826 0.69 0.630487
Target:  5'- cCGCCGUccucGUCGcucUCGUCGCcguucucgccaggcUCGCCCUCu -3'
miRNA:   3'- -GUGGCGc---CAGC---AGCAGCG--------------AGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 117794 0.66 0.78596
Target:  5'- aCugCGCGGcauccUCGUCGcCGUcCAUCCUg -3'
miRNA:   3'- -GugGCGCC-----AGCAGCaGCGaGUGGGAg -5'
24364 5' -59.6 NC_005264.1 + 117512 0.68 0.702079
Target:  5'- gGgCGCGGcgCGUCugcgGUCGCUC-CCCUa -3'
miRNA:   3'- gUgGCGCCa-GCAG----CAGCGAGuGGGAg -5'
24364 5' -59.6 NC_005264.1 + 117266 0.66 0.76801
Target:  5'- gACCGCGGUC-UCGU-GC-CACCUa- -3'
miRNA:   3'- gUGGCGCCAGcAGCAgCGaGUGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.