miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 5' -59.6 NC_005264.1 + 51093 0.68 0.702079
Target:  5'- -uUCGCGGUCGcCGgugcugcggUCuGCUCGCgCCUCg -3'
miRNA:   3'- guGGCGCCAGCaGC---------AG-CGAGUG-GGAG- -5'
24364 5' -59.6 NC_005264.1 + 51421 0.66 0.78596
Target:  5'- aCGCCGgGGagcCGcCGUCGC-C-CCCUCc -3'
miRNA:   3'- -GUGGCgCCa--GCaGCAGCGaGuGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 51954 0.66 0.7671
Target:  5'- uGCCGCuaacgCGUCGUgucggcgCGCUCACgCUCg -3'
miRNA:   3'- gUGGCGcca--GCAGCA-------GCGAGUGgGAG- -5'
24364 5' -59.6 NC_005264.1 + 52776 0.66 0.785074
Target:  5'- --aCGCGGUCGUgguacucgcguacUGUCGCUUGCCg-- -3'
miRNA:   3'- gugGCGCCAGCA-------------GCAGCGAGUGGgag -5'
24364 5' -59.6 NC_005264.1 + 53202 0.66 0.8119
Target:  5'- gGCCGCGaGUUGcaacCGUCGCgcccccCGCCCa- -3'
miRNA:   3'- gUGGCGC-CAGCa---GCAGCGa-----GUGGGag -5'
24364 5' -59.6 NC_005264.1 + 54459 0.73 0.401441
Target:  5'- cCACCGCcgagcugguaagGGcCGUCGUCGCccaugUCAuCCCUCg -3'
miRNA:   3'- -GUGGCG------------CCaGCAGCAGCG-----AGU-GGGAG- -5'
24364 5' -59.6 NC_005264.1 + 62941 0.68 0.669893
Target:  5'- aACCGCGGUcucgCGUCGaCGCuuuagcguccggacUCGCCCa- -3'
miRNA:   3'- gUGGCGCCA----GCAGCaGCG--------------AGUGGGag -5'
24364 5' -59.6 NC_005264.1 + 69054 0.74 0.372483
Target:  5'- gGCCGCGGccgccgggcaggucaUCGUCGUCGCgCACCg-- -3'
miRNA:   3'- gUGGCGCC---------------AGCAGCAGCGaGUGGgag -5'
24364 5' -59.6 NC_005264.1 + 80518 0.73 0.393255
Target:  5'- uCGCCGCGGUgcgcaaCGUCGUCGC-C-CCCa- -3'
miRNA:   3'- -GUGGCGCCA------GCAGCAGCGaGuGGGag -5'
24364 5' -59.6 NC_005264.1 + 82335 0.68 0.663016
Target:  5'- gCACCGCGG-CGaUGUU-CUCGCUCUCg -3'
miRNA:   3'- -GUGGCGCCaGCaGCAGcGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 83132 0.66 0.803395
Target:  5'- gGCCGCGGagG-CG-CGUcUGCCCUCa -3'
miRNA:   3'- gUGGCGCCagCaGCaGCGaGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 86599 0.69 0.59404
Target:  5'- gACaCGCGGUCGUCGcgccUCGCgacaGCCUUUc -3'
miRNA:   3'- gUG-GCGCCAGCAGC----AGCGag--UGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 92083 0.67 0.749611
Target:  5'- uCACCGCGuuGUUGcCGcUUGCUCGCCUg- -3'
miRNA:   3'- -GUGGCGC--CAGCaGC-AGCGAGUGGGag -5'
24364 5' -59.6 NC_005264.1 + 92437 0.69 0.633447
Target:  5'- aGCCGCacGGUC-UCGUCagGC-CGCCCUCc -3'
miRNA:   3'- gUGGCG--CCAGcAGCAG--CGaGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 93496 0.66 0.8119
Target:  5'- uGCUgGCGGcCGgcgCGUCGUUC-CCUUCg -3'
miRNA:   3'- gUGG-CGCCaGCa--GCAGCGAGuGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 95832 0.67 0.730828
Target:  5'- cCGCCGCuccguccaGGcagcacUCGcCGUUGCUCGCCCa- -3'
miRNA:   3'- -GUGGCG--------CC------AGCaGCAGCGAGUGGGag -5'
24364 5' -59.6 NC_005264.1 + 96106 0.66 0.78596
Target:  5'- uGCCGCGGUuuaggcgccggCGcUUGUUGCUC-CCCg- -3'
miRNA:   3'- gUGGCGCCA-----------GC-AGCAGCGAGuGGGag -5'
24364 5' -59.6 NC_005264.1 + 96318 0.72 0.443951
Target:  5'- --aCGCGGUCGUCGUCaGggCACgCUCg -3'
miRNA:   3'- gugGCGCCAGCAGCAG-CgaGUGgGAG- -5'
24364 5' -59.6 NC_005264.1 + 106236 0.66 0.8119
Target:  5'- uUACUcgaGCGGUCG-CGaggCGCUCGCgCCUg -3'
miRNA:   3'- -GUGG---CGCCAGCaGCa--GCGAGUG-GGAg -5'
24364 5' -59.6 NC_005264.1 + 113473 0.67 0.71557
Target:  5'- -cCCGCGGUCGUgccacgGUCGCgcgagugccaaccgCgACCCUCg -3'
miRNA:   3'- guGGCGCCAGCAg-----CAGCGa-------------G-UGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.