miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24365 3' -48.6 NC_005264.1 + 95097 0.66 0.999213
Target:  5'- gACCUGCGCCGAgAuacgCGaagGCGcCa -3'
miRNA:   3'- -UGGACGCGGUUgUuaaaGUaa-CGCaG- -5'
24365 3' -48.6 NC_005264.1 + 107645 0.66 0.99903
Target:  5'- gUCUGCGCCGAC-GUUUC---GCGgUCg -3'
miRNA:   3'- uGGACGCGGUUGuUAAAGuaaCGC-AG- -5'
24365 3' -48.6 NC_005264.1 + 88082 0.66 0.99903
Target:  5'- -aUUGCGCCaAGCAGUgcgcgUCGggcacaGCGUCg -3'
miRNA:   3'- ugGACGCGG-UUGUUAa----AGUaa----CGCAG- -5'
24365 3' -48.6 NC_005264.1 + 62710 0.66 0.99903
Target:  5'- uACCUGCGUaucggccgCGACGAUUcccgCAaccGCGUCg -3'
miRNA:   3'- -UGGACGCG--------GUUGUUAAa---GUaa-CGCAG- -5'
24365 3' -48.6 NC_005264.1 + 33354 0.66 0.99903
Target:  5'- cCCUGCGCCGccGCAAUcUCGa---GUCg -3'
miRNA:   3'- uGGACGCGGU--UGUUAaAGUaacgCAG- -5'
24365 3' -48.6 NC_005264.1 + 142854 0.66 0.998555
Target:  5'- aGCgaGCGCgGuCGGUUU-GUUGCGUCg -3'
miRNA:   3'- -UGgaCGCGgUuGUUAAAgUAACGCAG- -5'
24365 3' -48.6 NC_005264.1 + 127340 0.67 0.997896
Target:  5'- cACCUGCGCCG-CGGcgUCGccGuCGUCc -3'
miRNA:   3'- -UGGACGCGGUuGUUaaAGUaaC-GCAG- -5'
24365 3' -48.6 NC_005264.1 + 120700 0.67 0.997896
Target:  5'- gGCCUcGCGCCGACAAag-Ccg-GCGgUCg -3'
miRNA:   3'- -UGGA-CGCGGUUGUUaaaGuaaCGC-AG- -5'
24365 3' -48.6 NC_005264.1 + 78275 0.67 0.997896
Target:  5'- uGCCgucGCuCCGACAAgcgggcugUUCuUUGCGUCg -3'
miRNA:   3'- -UGGa--CGcGGUUGUUa-------AAGuAACGCAG- -5'
24365 3' -48.6 NC_005264.1 + 8313 0.67 0.997896
Target:  5'- cACCUGCGCCG-CGGcgUCGccGuCGUCc -3'
miRNA:   3'- -UGGACGCGGUuGUUaaAGUaaC-GCAG- -5'
24365 3' -48.6 NC_005264.1 + 112033 0.67 0.997896
Target:  5'- aACCUGCGCgcgcgccgaucCGACAAgUUCAagGUGUUu -3'
miRNA:   3'- -UGGACGCG-----------GUUGUUaAAGUaaCGCAG- -5'
24365 3' -48.6 NC_005264.1 + 35153 0.67 0.997655
Target:  5'- gGCCUG-GCCGcggugugucugguggGCAAggUUCGggGCGUCc -3'
miRNA:   3'- -UGGACgCGGU---------------UGUUa-AAGUaaCGCAG- -5'
24365 3' -48.6 NC_005264.1 + 3857 0.67 0.997202
Target:  5'- uCCUGCGCCGGgGAUUgggcugccccacgucUCcgUcuucGCGUCg -3'
miRNA:   3'- uGGACGCGGUUgUUAA---------------AGuaA----CGCAG- -5'
24365 3' -48.6 NC_005264.1 + 100183 0.67 0.997001
Target:  5'- ---cGCGCCAACGAgUUCGgucGCGUg -3'
miRNA:   3'- uggaCGCGGUUGUUaAAGUaa-CGCAg -5'
24365 3' -48.6 NC_005264.1 + 108721 0.67 0.996448
Target:  5'- gGCa-GCGCCAACuccAUUUCAggugGCGUg -3'
miRNA:   3'- -UGgaCGCGGUUGu--UAAAGUaa--CGCAg -5'
24365 3' -48.6 NC_005264.1 + 90877 0.67 0.996448
Target:  5'- uUCUGUGCCGGCAAauagCAUUaccgGCGUUg -3'
miRNA:   3'- uGGACGCGGUUGUUaaa-GUAA----CGCAG- -5'
24365 3' -48.6 NC_005264.1 + 52942 0.67 0.995813
Target:  5'- gGCC-GCGCCcGCGGcg-CAUUGCGcCg -3'
miRNA:   3'- -UGGaCGCGGuUGUUaaaGUAACGCaG- -5'
24365 3' -48.6 NC_005264.1 + 79751 0.68 0.995088
Target:  5'- cACCUGCGCU-ACGuugUUCcgUcGUGUCa -3'
miRNA:   3'- -UGGACGCGGuUGUua-AAGuaA-CGCAG- -5'
24365 3' -48.6 NC_005264.1 + 30400 0.68 0.993334
Target:  5'- gGCCuUGaCGCCGGCGAg--CGUaGCGUUg -3'
miRNA:   3'- -UGG-AC-GCGGUUGUUaaaGUAaCGCAG- -5'
24365 3' -48.6 NC_005264.1 + 131486 0.68 0.993334
Target:  5'- gGCCcggcagGCGUCAGCGAgUUC-UUGCGUg -3'
miRNA:   3'- -UGGa-----CGCGGUUGUUaAAGuAACGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.