Results 21 - 40 of 205 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24368 | 5' | -58.3 | NC_005264.1 | + | 38307 | 0.66 | 0.807435 |
Target: 5'- aCGCCUUCGC-GGAGGCCgacgaggguuggcgGGCCcugGCCg -3' miRNA: 3'- aGUGGGGGCGaUUUUCGGa-------------CCGG---CGG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 83247 | 0.66 | 0.812613 |
Target: 5'- -gGCCgCCGCUGAu-GCgCUGGCgCGgCg -3' miRNA: 3'- agUGGgGGCGAUUuuCG-GACCG-GCgG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 3935 | 0.66 | 0.837614 |
Target: 5'- -gGCCgCCGUcaagaagggUAGAGGaacguCCUGGCCGCg -3' miRNA: 3'- agUGGgGGCG---------AUUUUC-----GGACCGGCGg -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 127835 | 0.66 | 0.837614 |
Target: 5'- gUUGCCUCCGCggc-GGCC-GGCgGUCu -3' miRNA: 3'- -AGUGGGGGCGauuuUCGGaCCGgCGG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 38001 | 0.67 | 0.7771 |
Target: 5'- cCACCgCCGCcggacuauUGAAcGCCgUGGgCGCCu -3' miRNA: 3'- aGUGGgGGCG--------AUUUuCGG-ACCgGCGG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 134944 | 0.67 | 0.795141 |
Target: 5'- cUCACCCUCGCcGAGAcgCUGGCCa-- -3' miRNA: 3'- -AGUGGGGGCGaUUUUcgGACCGGcgg -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 11557 | 0.66 | 0.821115 |
Target: 5'- uUCAgagCCCGCgauuGGCCUagaGGCCGCUu -3' miRNA: 3'- -AGUgg-GGGCGauuuUCGGA---CCGGCGG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 41401 | 0.66 | 0.845596 |
Target: 5'- -gGCCUCCGCUuucuuccuAGGCa-GGCCGgCg -3' miRNA: 3'- agUGGGGGCGAuu------UUCGgaCCGGCgG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 150524 | 0.67 | 0.795141 |
Target: 5'- aCACCCCUGUgcuAAAGCUggauaguacagUGcgcaccgcccuGCCGCCa -3' miRNA: 3'- aGUGGGGGCGau-UUUCGG-----------AC-----------CGGCGG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 137501 | 0.66 | 0.845596 |
Target: 5'- cUACCCCCaacuc--GUCcGGCCGCCg -3' miRNA: 3'- aGUGGGGGcgauuuuCGGaCCGGCGG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 42820 | 0.66 | 0.812613 |
Target: 5'- cCGCCggUCCGCgaggggGGAGGCCcaccuGCCGCCc -3' miRNA: 3'- aGUGG--GGGCGa-----UUUUCGGac---CGGCGG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 145012 | 0.66 | 0.803952 |
Target: 5'- uUUACCUUggCGCUAAAuuuGCCgUGGCCaggGCCu -3' miRNA: 3'- -AGUGGGG--GCGAUUUu--CGG-ACCGG---CGG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 31392 | 0.66 | 0.829451 |
Target: 5'- gCGCCUCCaaGCacguAGCg-GGCCGCCu -3' miRNA: 3'- aGUGGGGG--CGauuuUCGgaCCGGCGG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 38505 | 0.66 | 0.829451 |
Target: 5'- gUACUCCCGCcAGucGCCcGccccacgggucaGCCGCCg -3' miRNA: 3'- aGUGGGGGCGaUUuuCGGaC------------CGGCGG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 137746 | 0.66 | 0.837614 |
Target: 5'- gUCugCCCCGCUuguc-CCcGG-CGCCg -3' miRNA: 3'- -AGugGGGGCGAuuuucGGaCCgGCGG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 92027 | 0.66 | 0.837614 |
Target: 5'- -aACgCCCGCgaaagaaaugUGGAGGUCggugGGCCGCg -3' miRNA: 3'- agUGgGGGCG----------AUUUUCGGa---CCGGCGg -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 46406 | 0.67 | 0.766031 |
Target: 5'- gUCGCCCCCGCggccAGAcGCCcccagcgaccuGCCGCg -3' miRNA: 3'- -AGUGGGGGCGa---UUUuCGGac---------CGGCGg -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 116261 | 0.67 | 0.767888 |
Target: 5'- -aGCCUCCGCacgcgcgacuUGGAAGCCguggcgcgGGCgGCUa -3' miRNA: 3'- agUGGGGGCG----------AUUUUCGGa-------CCGgCGG- -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 19620 | 0.67 | 0.786188 |
Target: 5'- gCGCCCUCGCcAAcaauucccucuGAGCgUGGUCGUg -3' miRNA: 3'- aGUGGGGGCGaUU-----------UUCGgACCGGCGg -5' |
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24368 | 5' | -58.3 | NC_005264.1 | + | 6252 | 0.67 | 0.795141 |
Target: 5'- cCGCCUCCGUcgc-GGUCgucGCCGCCg -3' miRNA: 3'- aGUGGGGGCGauuuUCGGac-CGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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