miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 5' -58.3 NC_005264.1 + 158531 0.73 0.455937
Target:  5'- gCACCUgCCGCUAAAcuCCagGGCCGCUc -3'
miRNA:   3'- aGUGGG-GGCGAUUUucGGa-CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 69844 0.72 0.465043
Target:  5'- -uGCCCCCGCUAc-GGCCgGuGCUGCg -3'
miRNA:   3'- agUGGGGGCGAUuuUCGGaC-CGGCGg -5'
24368 5' -58.3 NC_005264.1 + 62357 0.72 0.474243
Target:  5'- -aACCCCUcC--AGGGcCCUGGCCGCCg -3'
miRNA:   3'- agUGGGGGcGauUUUC-GGACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 45852 0.72 0.492909
Target:  5'- cCGCCCCCaagaCUucGAGUCUGcgcGCCGCCa -3'
miRNA:   3'- aGUGGGGGc---GAuuUUCGGAC---CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 73658 0.72 0.492909
Target:  5'- aCACCUgCCGCcGGGAcgacccuacuuGCCUGGCCuGCCa -3'
miRNA:   3'- aGUGGG-GGCGaUUUU-----------CGGACCGG-CGG- -5'
24368 5' -58.3 NC_005264.1 + 12112 0.72 0.496683
Target:  5'- aCACCCCCGCgagAAAAacugacgauuccuccGCCgGcGCUGCCc -3'
miRNA:   3'- aGUGGGGGCGa--UUUU---------------CGGaC-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 57931 0.72 0.502368
Target:  5'- cCACUCCCGCUAuggcGCCUguucGGCCugagGCCu -3'
miRNA:   3'- aGUGGGGGCGAUuuu-CGGA----CCGG----CGG- -5'
24368 5' -58.3 NC_005264.1 + 125809 0.72 0.502368
Target:  5'- gUguCCCCCGCacGGAGCCUGGaCGUa -3'
miRNA:   3'- -AguGGGGGCGauUUUCGGACCgGCGg -5'
24368 5' -58.3 NC_005264.1 + 45861 0.72 0.511905
Target:  5'- aCACuCCgCCGCcaUAGuAGUCUcGGCCGCCa -3'
miRNA:   3'- aGUG-GG-GGCG--AUUuUCGGA-CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 36543 0.72 0.511905
Target:  5'- aUCGgCCgCGCgcccGAAAGCggcaUGGCCGCCu -3'
miRNA:   3'- -AGUgGGgGCGa---UUUUCGg---ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 149382 0.71 0.521517
Target:  5'- --gUCCCCGC-AGGAGCCccuucgGcGCCGCCg -3'
miRNA:   3'- aguGGGGGCGaUUUUCGGa-----C-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 37272 0.71 0.521517
Target:  5'- gCGCUCCUGCc-GAAGCCcccuGCCGCCg -3'
miRNA:   3'- aGUGGGGGCGauUUUCGGac--CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 156299 0.71 0.521517
Target:  5'- gCGCUCCUGCc-GAAGCCcccuGCCGCCg -3'
miRNA:   3'- aGUGGGGGCGauUUUCGGac--CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 30355 0.71 0.521517
Target:  5'- --gUCCCCGC-AGGAGCCccuucgGcGCCGCCg -3'
miRNA:   3'- aguGGGGGCGaUUUUCGGa-----C-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 109958 0.71 0.530227
Target:  5'- aCGgCCCUGCUGAuggcagguaccgcGAGCCUGcCCGCUc -3'
miRNA:   3'- aGUgGGGGCGAUU-------------UUCGGACcGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 152609 0.71 0.531198
Target:  5'- aCGCgCCCGCUAuuGAGCCcgaGGCCagcgagGCCg -3'
miRNA:   3'- aGUGgGGGCGAUu-UUCGGa--CCGG------CGG- -5'
24368 5' -58.3 NC_005264.1 + 33921 0.71 0.531198
Target:  5'- uUCugCCgCCagGCUggGAAGGCCgUGGCgCGCCg -3'
miRNA:   3'- -AGugGG-GG--CGA--UUUUCGG-ACCG-GCGG- -5'
24368 5' -58.3 NC_005264.1 + 96356 0.71 0.531198
Target:  5'- gCGCagCCCGCcaagcauuGAGUCUGGCCGCg -3'
miRNA:   3'- aGUGg-GGGCGauu-----UUCGGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 113241 0.71 0.540943
Target:  5'- gCGCCCCC-Cgucgu-CCUGGUCGCCg -3'
miRNA:   3'- aGUGGGGGcGauuuucGGACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 30354 0.71 0.540943
Target:  5'- gCugCCCUGC----GGCCacgUGGCUGCCg -3'
miRNA:   3'- aGugGGGGCGauuuUCGG---ACCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.