miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 5' -58.3 NC_005264.1 + 92657 0.66 0.829451
Target:  5'- -gGCCCUCGCgccgcaaagAGGAGuuCCUgaaccuacgcGGCCGCCu -3'
miRNA:   3'- agUGGGGGCGa--------UUUUC--GGA----------CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 157532 0.66 0.829451
Target:  5'- gUACUCCCGCcAGucGCCcGccccacgggucaGCCGCCg -3'
miRNA:   3'- aGUGGGGGCGaUUuuCGGaC------------CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 38505 0.66 0.829451
Target:  5'- gUACUCCCGCcAGucGCCcGccccacgggucaGCCGCCg -3'
miRNA:   3'- aGUGGGGGCGaUUuuCGGaC------------CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 31392 0.66 0.829451
Target:  5'- gCGCCUCCaaGCacguAGCg-GGCCGCCu -3'
miRNA:   3'- aGUGGGGG--CGauuuUCGgaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 4729 0.66 0.829451
Target:  5'- aCGCCgcugCCCGCc--GAGCCggcguccgggggUGGaCCGCCg -3'
miRNA:   3'- aGUGG----GGGCGauuUUCGG------------ACC-GGCGG- -5'
24368 5' -58.3 NC_005264.1 + 146084 0.66 0.829451
Target:  5'- gCGCCCCCGCgc-GGGUCUuGGUgGaCUa -3'
miRNA:   3'- aGUGGGGGCGauuUUCGGA-CCGgC-GG- -5'
24368 5' -58.3 NC_005264.1 + 162223 0.66 0.821115
Target:  5'- gUCGCCUCCaGCgaacgccaccgUAGucGCCUcGCUGCCg -3'
miRNA:   3'- -AGUGGGGG-CG-----------AUUuuCGGAcCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 109440 0.66 0.821115
Target:  5'- uUUACCCCaGUggaaGGAGGCCUGGUCuCUa -3'
miRNA:   3'- -AGUGGGGgCGa---UUUUCGGACCGGcGG- -5'
24368 5' -58.3 NC_005264.1 + 130584 0.66 0.821115
Target:  5'- uUCAgagCCCGCgauuGGCCUagaGGCCGCUu -3'
miRNA:   3'- -AGUgg-GGGCGauuuUCGGA---CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 11557 0.66 0.821115
Target:  5'- uUCAgagCCCGCgauuGGCCUagaGGCCGCUu -3'
miRNA:   3'- -AGUgg-GGGCGauuuUCGGA---CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 61818 0.66 0.821115
Target:  5'- gCAUCgCCGggcaguGCCUGGCuCGCCu -3'
miRNA:   3'- aGUGGgGGCgauuuuCGGACCG-GCGG- -5'
24368 5' -58.3 NC_005264.1 + 147260 0.66 0.821115
Target:  5'- gCugCgCCCGC---AAGCUUGGCCacgagcugcacGCCg -3'
miRNA:   3'- aGugG-GGGCGauuUUCGGACCGG-----------CGG- -5'
24368 5' -58.3 NC_005264.1 + 77162 0.66 0.821115
Target:  5'- cCGCgaaCUCCGCUu---GCCaGGUCGCCu -3'
miRNA:   3'- aGUG---GGGGCGAuuuuCGGaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 105576 0.66 0.821115
Target:  5'- -gACCCCCGCg---GGCUagGGCucgagCGCCu -3'
miRNA:   3'- agUGGGGGCGauuuUCGGa-CCG-----GCGG- -5'
24368 5' -58.3 NC_005264.1 + 2913 0.66 0.821115
Target:  5'- cCACCCuuGUcac--GCUUGGCUGCg -3'
miRNA:   3'- aGUGGGggCGauuuuCGGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 66211 0.66 0.812613
Target:  5'- gCGCCUCCGCggccagcGAAGGaCUUGGCgaGCUg -3'
miRNA:   3'- aGUGGGGGCGa------UUUUC-GGACCGg-CGG- -5'
24368 5' -58.3 NC_005264.1 + 11783 0.66 0.812613
Target:  5'- aCGCUCUCGUaGGccGAGCCUcGCCGCa -3'
miRNA:   3'- aGUGGGGGCGaUU--UUCGGAcCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 42820 0.66 0.812613
Target:  5'- cCGCCggUCCGCgaggggGGAGGCCcaccuGCCGCCc -3'
miRNA:   3'- aGUGG--GGGCGa-----UUUUCGGac---CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 161846 0.66 0.812613
Target:  5'- cCGCCggUCCGCgaggggGGAGGCCcaccuGCCGCCc -3'
miRNA:   3'- aGUGG--GGGCGa-----UUUUCGGac---CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 83247 0.66 0.812613
Target:  5'- -gGCCgCCGCUGAu-GCgCUGGCgCGgCg -3'
miRNA:   3'- agUGGgGGCGAUUuuCG-GACCG-GCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.