miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 5' -58.3 NC_005264.1 + 13207 0.68 0.690717
Target:  5'- gUCGCCgCCGCcguc-GCCgGGCUGCUu -3'
miRNA:   3'- -AGUGGgGGCGauuuuCGGaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 16962 0.69 0.660762
Target:  5'- gCAUCCCCac-GAGAGCagaagaGGCCGCCa -3'
miRNA:   3'- aGUGGGGGcgaUUUUCGga----CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 17036 0.67 0.795141
Target:  5'- gUCGCCagcagcgcggCCGCUAAGAGCau-GCCGaCCg -3'
miRNA:   3'- -AGUGGg---------GGCGAUUUUCGgacCGGC-GG- -5'
24368 5' -58.3 NC_005264.1 + 18291 0.67 0.758558
Target:  5'- cCGCCCCCaGggGGAAuGCCUaGGacCCGCCc -3'
miRNA:   3'- aGUGGGGG-CgaUUUU-CGGA-CC--GGCGG- -5'
24368 5' -58.3 NC_005264.1 + 19322 0.67 0.749121
Target:  5'- -gGCCCCCag-GAAAGCCggaaGGaCGCCg -3'
miRNA:   3'- agUGGGGGcgaUUUUCGGa---CCgGCGG- -5'
24368 5' -58.3 NC_005264.1 + 19618 0.7 0.58046
Target:  5'- uUCGCCCCUccccuCUGAAcGCuuuCUGGCUGCCu -3'
miRNA:   3'- -AGUGGGGGc----GAUUUuCG---GACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 19620 0.67 0.786188
Target:  5'- gCGCCCUCGCcAAcaauucccucuGAGCgUGGUCGUg -3'
miRNA:   3'- aGUGGGGGCGaUU-----------UUCGgACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 20880 0.66 0.812613
Target:  5'- -uGCCCuguuuCCGUUAaacauGAGGCCUGGCUcgggcgGCCc -3'
miRNA:   3'- agUGGG-----GGCGAU-----UUUCGGACCGG------CGG- -5'
24368 5' -58.3 NC_005264.1 + 25561 0.68 0.739585
Target:  5'- gUCGCgCUCGUccagGGGAGCuCUGGCCcaugGCCa -3'
miRNA:   3'- -AGUGgGGGCGa---UUUUCG-GACCGG----CGG- -5'
24368 5' -58.3 NC_005264.1 + 25564 0.67 0.758558
Target:  5'- cCGCCaacgCCGCggAAucGCaaccacacagCUGGCCGCCg -3'
miRNA:   3'- aGUGGg---GGCGa-UUuuCG----------GACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 29118 0.67 0.76696
Target:  5'- -aACCCCCcgagGCUGuaccugaGGAGCgCgUGGCCGCa -3'
miRNA:   3'- agUGGGGG----CGAU-------UUUCG-G-ACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 29307 0.71 0.570512
Target:  5'- aCGCCgCCCGUUAcAGGUCUGGUgGUUa -3'
miRNA:   3'- aGUGG-GGGCGAUuUUCGGACCGgCGG- -5'
24368 5' -58.3 NC_005264.1 + 30354 0.71 0.540943
Target:  5'- gCugCCCUGC----GGCCacgUGGCUGCCg -3'
miRNA:   3'- aGugGGGGCGauuuUCGG---ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 30355 0.71 0.521517
Target:  5'- --gUCCCCGC-AGGAGCCccuucgGcGCCGCCg -3'
miRNA:   3'- aguGGGGGCGaUUUUCGGa-----C-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 30525 0.67 0.786188
Target:  5'- -gGCUCUCGCgc--AGUUUGGCCGaCCg -3'
miRNA:   3'- agUGGGGGCGauuuUCGGACCGGC-GG- -5'
24368 5' -58.3 NC_005264.1 + 31149 0.68 0.739585
Target:  5'- -gGCCCacgcuaCGCUugcGAGCCgacGuGCCGCCa -3'
miRNA:   3'- agUGGGg-----GCGAuu-UUCGGa--C-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 31213 0.68 0.700619
Target:  5'- -gGCCCUCcagagagaGCUGAAAGCUgaugugGGCCGUg -3'
miRNA:   3'- agUGGGGG--------CGAUUUUCGGa-----CCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 31392 0.66 0.829451
Target:  5'- gCGCCUCCaaGCacguAGCg-GGCCGCCu -3'
miRNA:   3'- aGUGGGGG--CGauuuUCGgaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 32542 0.66 0.803952
Target:  5'- -gGCCCUgGCUGu-GGaUgUGGCUGCCg -3'
miRNA:   3'- agUGGGGgCGAUuuUC-GgACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 32589 0.74 0.40175
Target:  5'- gCACCCgCGCccaaaagguucgAAAGGCCaagaaggucuUGGCCGCCa -3'
miRNA:   3'- aGUGGGgGCGa-----------UUUUCGG----------ACCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.