miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 5' -58.3 NC_005264.1 + 220 0.69 0.630605
Target:  5'- -aGCCCCCgaucGCUuuccguGCCUGG-CGCCa -3'
miRNA:   3'- agUGGGGG----CGAuuuu--CGGACCgGCGG- -5'
24368 5' -58.3 NC_005264.1 + 1441 0.68 0.729957
Target:  5'- -gGCCUCCGC-GGGAGCCagcaccGGCCaucGCCg -3'
miRNA:   3'- agUGGGGGCGaUUUUCGGa-----CCGG---CGG- -5'
24368 5' -58.3 NC_005264.1 + 2374 0.67 0.795141
Target:  5'- gCACCgaguggccgucgCCCGC-AGGAGCCcGG-CGCCg -3'
miRNA:   3'- aGUGG------------GGGCGaUUUUCGGaCCgGCGG- -5'
24368 5' -58.3 NC_005264.1 + 2913 0.66 0.821115
Target:  5'- cCACCCuuGUcac--GCUUGGCUGCg -3'
miRNA:   3'- aGUGGGggCGauuuuCGGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 3606 0.68 0.720248
Target:  5'- aUUACCgCCGCgGGGGGCCgcgagggcgGGCgCGCUg -3'
miRNA:   3'- -AGUGGgGGCGaUUUUCGGa--------CCG-GCGG- -5'
24368 5' -58.3 NC_005264.1 + 3935 0.66 0.837614
Target:  5'- -gGCCgCCGUcaagaagggUAGAGGaacguCCUGGCCGCg -3'
miRNA:   3'- agUGGgGGCG---------AUUUUC-----GGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 4240 0.71 0.540943
Target:  5'- cCAUCUCUGCg--GAGCCUcuuGCCGCCg -3'
miRNA:   3'- aGUGGGGGCGauuUUCGGAc--CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 4729 0.66 0.829451
Target:  5'- aCGCCgcugCCCGCc--GAGCCggcguccgggggUGGaCCGCCg -3'
miRNA:   3'- aGUGG----GGGCGauuUUCGG------------ACC-GGCGG- -5'
24368 5' -58.3 NC_005264.1 + 5586 0.68 0.710466
Target:  5'- cCACCUCCaacgc--GCCgagGGCCGCCa -3'
miRNA:   3'- aGUGGGGGcgauuuuCGGa--CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 6252 0.67 0.795141
Target:  5'- cCGCCUCCGUcgc-GGUCgucGCCGCCg -3'
miRNA:   3'- aGUGGGGGCGauuuUCGGac-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 6645 0.67 0.7771
Target:  5'- -uGCgCCCCGacauauAGCCgGcGCCGCCa -3'
miRNA:   3'- agUG-GGGGCgauuu-UCGGaC-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 8375 0.66 0.835184
Target:  5'- cUCGCCaCUgGCguccGAGUCauggugaauaaucgUGGCCGCCg -3'
miRNA:   3'- -AGUGG-GGgCGauu-UUCGG--------------ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 8708 0.7 0.620546
Target:  5'- cUCGCUCUgCGCgc---GCgUGGCCGCCg -3'
miRNA:   3'- -AGUGGGG-GCGauuuuCGgACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 9331 0.75 0.347246
Target:  5'- uUCGUCCCCGCcAGGGGC--GGCCGCCg -3'
miRNA:   3'- -AGUGGGGGCGaUUUUCGgaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 9562 0.69 0.680768
Target:  5'- cCGCgCCUCGCUAcaGAAGCCgGGuUCGUCu -3'
miRNA:   3'- aGUG-GGGGCGAU--UUUCGGaCC-GGCGG- -5'
24368 5' -58.3 NC_005264.1 + 11557 0.66 0.821115
Target:  5'- uUCAgagCCCGCgauuGGCCUagaGGCCGCUu -3'
miRNA:   3'- -AGUgg-GGGCGauuuUCGGA---CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 11783 0.66 0.812613
Target:  5'- aCGCUCUCGUaGGccGAGCCUcGCCGCa -3'
miRNA:   3'- aGUGGGGGCGaUU--UUCGGAcCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 12112 0.72 0.496683
Target:  5'- aCACCCCCGCgagAAAAacugacgauuccuccGCCgGcGCUGCCc -3'
miRNA:   3'- aGUGGGGGCGa--UUUU---------------CGGaC-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 12136 0.67 0.786188
Target:  5'- gCAgCCCCGCcGAGAGCC---CUGCCu -3'
miRNA:   3'- aGUgGGGGCGaUUUUCGGaccGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 12300 0.74 0.370627
Target:  5'- --cUCCCCGCcc-GAGCCUGgaGCCGCCu -3'
miRNA:   3'- aguGGGGGCGauuUUCGGAC--CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.