miRNA display CGI


Results 1 - 20 of 205 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 5' -58.3 NC_005264.1 + 162701 0.66 0.803952
Target:  5'- gCGCgCCgGCguuAAGGC--GGCCGCCg -3'
miRNA:   3'- aGUGgGGgCGau-UUUCGgaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 162368 0.68 0.720248
Target:  5'- -uGCuCUUCGCUAgcAGAGCUaUGGUCGCCa -3'
miRNA:   3'- agUG-GGGGCGAU--UUUCGG-ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 162223 0.66 0.821115
Target:  5'- gUCGCCUCCaGCgaacgccaccgUAGucGCCUcGCUGCCg -3'
miRNA:   3'- -AGUGGGGG-CG-----------AUUuuCGGAcCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 161846 0.66 0.812613
Target:  5'- cCGCCggUCCGCgaggggGGAGGCCcaccuGCCGCCc -3'
miRNA:   3'- aGUGG--GGGCGa-----UUUUCGGac---CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 161631 0.7 0.600458
Target:  5'- gCAaCCCCGC----AGCCaUGGCCGCg -3'
miRNA:   3'- aGUgGGGGCGauuuUCGG-ACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 160428 0.66 0.845596
Target:  5'- -gGCCUCCGCUuucuuccuAGGCa-GGCCGgCg -3'
miRNA:   3'- agUGGGGGCGAuu------UUCGgaCCGGCgG- -5'
24368 5' -58.3 NC_005264.1 + 160329 0.75 0.317744
Target:  5'- gUCGCCCCCcgcGCUGAAGucgcGCgaGGCcCGCCg -3'
miRNA:   3'- -AGUGGGGG---CGAUUUU----CGgaCCG-GCGG- -5'
24368 5' -58.3 NC_005264.1 + 159449 0.71 0.550748
Target:  5'- gCACcgaCCCCGCguuccggAGAAGCCcucGCCGCCc -3'
miRNA:   3'- aGUG---GGGGCGa------UUUUCGGac-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 158835 0.66 0.803952
Target:  5'- -aGCCCCUGgUGggcgagGAGGCaUGuGCCGCCc -3'
miRNA:   3'- agUGGGGGCgAU------UUUCGgAC-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 158823 0.69 0.626581
Target:  5'- cUUGCCCCCGCUcuAcagucAGCCgacagagaacccGCCGCCg -3'
miRNA:   3'- -AGUGGGGGCGAuuU-----UCGGac----------CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 158531 0.73 0.455937
Target:  5'- gCACCUgCCGCUAAAcuCCagGGCCGCUc -3'
miRNA:   3'- aGUGGG-GGCGAUUUucGGa-CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 157742 0.76 0.313484
Target:  5'- cUCGCCCCCagGCgUAGAGGaCCccuccccggacgggcUGGCCGCCu -3'
miRNA:   3'- -AGUGGGGG--CG-AUUUUC-GG---------------ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 157532 0.66 0.829451
Target:  5'- gUACUCCCGCcAGucGCCcGccccacgggucaGCCGCCg -3'
miRNA:   3'- aGUGGGGGCGaUUuuCGGaC------------CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 157334 0.66 0.807435
Target:  5'- aCGCCUUCGC-GGAGGCCgacgaggguuggcgGGCCcugGCCg -3'
miRNA:   3'- aGUGGGGGCGaUUUUCGGa-------------CCGG---CGG- -5'
24368 5' -58.3 NC_005264.1 + 157028 0.67 0.7771
Target:  5'- cCACCgCCGCcggacuauUGAAcGCCgUGGgCGCCu -3'
miRNA:   3'- aGUGGgGGCG--------AUUUuCGG-ACCgGCGG- -5'
24368 5' -58.3 NC_005264.1 + 156299 0.71 0.521517
Target:  5'- gCGCUCCUGCc-GAAGCCcccuGCCGCCg -3'
miRNA:   3'- aGUGGGGGCGauUUUCGGac--CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 156215 0.67 0.794252
Target:  5'- -uGCCCCCGCgu--GGCCgugGGCauaauuucccacgCGCUc -3'
miRNA:   3'- agUGGGGGCGauuuUCGGa--CCG-------------GCGG- -5'
24368 5' -58.3 NC_005264.1 + 155679 0.69 0.630605
Target:  5'- -gACCCgUGCgggauGGaCCUGGCCGCg -3'
miRNA:   3'- agUGGGgGCGauuu-UC-GGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 154039 0.67 0.786188
Target:  5'- -gGCgCUCGaagAGGAGCgCUGGCCGUCc -3'
miRNA:   3'- agUGgGGGCga-UUUUCG-GACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 152947 0.71 0.570512
Target:  5'- uUCugCCgCCaggGCUggGAAGGCCgUGGCgCGCCg -3'
miRNA:   3'- -AGugGG-GG---CGA--UUUUCGG-ACCG-GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.