miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 5' -58.3 NC_005264.1 + 30354 0.71 0.540943
Target:  5'- gCugCCCUGC----GGCCacgUGGCUGCCg -3'
miRNA:   3'- aGugGGGGCGauuuUCGG---ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 73658 0.72 0.492909
Target:  5'- aCACCUgCCGCcGGGAcgacccuacuuGCCUGGCCuGCCa -3'
miRNA:   3'- aGUGGG-GGCGaUUUU-----------CGGACCGG-CGG- -5'
24368 5' -58.3 NC_005264.1 + 12112 0.72 0.496683
Target:  5'- aCACCCCCGCgagAAAAacugacgauuccuccGCCgGcGCUGCCc -3'
miRNA:   3'- aGUGGGGGCGa--UUUU---------------CGGaC-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 45861 0.72 0.511905
Target:  5'- aCACuCCgCCGCcaUAGuAGUCUcGGCCGCCa -3'
miRNA:   3'- aGUG-GG-GGCG--AUUuUCGGA-CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 36543 0.72 0.511905
Target:  5'- aUCGgCCgCGCgcccGAAAGCggcaUGGCCGCCu -3'
miRNA:   3'- -AGUgGGgGCGa---UUUUCGg---ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 149382 0.71 0.521517
Target:  5'- --gUCCCCGC-AGGAGCCccuucgGcGCCGCCg -3'
miRNA:   3'- aguGGGGGCGaUUUUCGGa-----C-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 156299 0.71 0.521517
Target:  5'- gCGCUCCUGCc-GAAGCCcccuGCCGCCg -3'
miRNA:   3'- aGUGGGGGCGauUUUCGGac--CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 96356 0.71 0.531198
Target:  5'- gCGCagCCCGCcaagcauuGAGUCUGGCCGCg -3'
miRNA:   3'- aGUGg-GGGCGauu-----UUCGGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 4240 0.71 0.540943
Target:  5'- cCAUCUCUGCg--GAGCCUcuuGCCGCCg -3'
miRNA:   3'- aGUGGGGGCGauuUUCGGAc--CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 62357 0.72 0.474243
Target:  5'- -aACCCCUcC--AGGGcCCUGGCCGCCg -3'
miRNA:   3'- agUGGGGGcGauUUUC-GGACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 114435 0.73 0.438019
Target:  5'- -uGCCCCCacccGCU-----CCUGGCCGCCg -3'
miRNA:   3'- agUGGGGG----CGAuuuucGGACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 32589 0.74 0.40175
Target:  5'- gCACCCgCGCccaaaagguucgAAAGGCCaagaaggucuUGGCCGCCa -3'
miRNA:   3'- aGUGGGgGCGa-----------UUUUCGG----------ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 48178 0.76 0.310669
Target:  5'- gCACCCCCGCUucaugGAGAcGCUacGGCCGUCu -3'
miRNA:   3'- aGUGGGGGCGA-----UUUU-CGGa-CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 157742 0.76 0.313484
Target:  5'- cUCGCCCCCagGCgUAGAGGaCCccuccccggacgggcUGGCCGCCu -3'
miRNA:   3'- -AGUGGGGG--CG-AUUUUC-GG---------------ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 160329 0.75 0.317744
Target:  5'- gUCGCCCCCcgcGCUGAAGucgcGCgaGGCcCGCCg -3'
miRNA:   3'- -AGUGGGGG---CGAUUUU----CGgaCCG-GCGG- -5'
24368 5' -58.3 NC_005264.1 + 9331 0.75 0.347246
Target:  5'- uUCGUCCCCGCcAGGGGC--GGCCGCCg -3'
miRNA:   3'- -AGUGGGGGCGaUUUUCGgaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 59118 0.75 0.354921
Target:  5'- cCGCCgCCGCUGAu-GCC-GcGCCGCCg -3'
miRNA:   3'- aGUGGgGGCGAUUuuCGGaC-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 80771 0.74 0.362715
Target:  5'- aCcCCUCCGCgcagAGAucuGGCCUGGCCGUa -3'
miRNA:   3'- aGuGGGGGCGa---UUU---UCGGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 77863 0.74 0.362715
Target:  5'- cCGCCacgaCGCUAAcgcagcAGCCUGGCCGCa -3'
miRNA:   3'- aGUGGgg--GCGAUUu-----UCGGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 131327 0.74 0.370627
Target:  5'- --cUCCCCGCcc-GAGCCUGgaGCCGCCu -3'
miRNA:   3'- aguGGGGGCGauuUUCGGAC--CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.