miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 5' -58.3 NC_005264.1 + 11783 0.66 0.812613
Target:  5'- aCGCUCUCGUaGGccGAGCCUcGCCGCa -3'
miRNA:   3'- aGUGGGGGCGaUU--UUCGGAcCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 42796 0.66 0.803952
Target:  5'- uUCcCCCCCGCUAGAcccCCUGaGCUuGUCu -3'
miRNA:   3'- -AGuGGGGGCGAUUUuc-GGAC-CGG-CGG- -5'
24368 5' -58.3 NC_005264.1 + 105576 0.66 0.821115
Target:  5'- -gACCCCCGCg---GGCUagGGCucgagCGCCu -3'
miRNA:   3'- agUGGGGGCGauuuUCGGa-CCG-----GCGG- -5'
24368 5' -58.3 NC_005264.1 + 32781 0.66 0.803952
Target:  5'- aUCGCCaCgGCagcGAcGGUCUGGCCGCa -3'
miRNA:   3'- -AGUGGgGgCGa--UUuUCGGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 32542 0.66 0.803952
Target:  5'- -gGCCCUgGCUGu-GGaUgUGGCUGCCg -3'
miRNA:   3'- agUGGGGgCGAUuuUC-GgACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 2913 0.66 0.821115
Target:  5'- cCACCCuuGUcac--GCUUGGCUGCg -3'
miRNA:   3'- aGUGGGggCGauuuuCGGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 58349 0.66 0.803952
Target:  5'- cUCGCCCCUGUcguacucuGGCggGGCCGgCg -3'
miRNA:   3'- -AGUGGGGGCGauuu----UCGgaCCGGCgG- -5'
24368 5' -58.3 NC_005264.1 + 66211 0.66 0.812613
Target:  5'- gCGCCUCCGCggccagcGAAGGaCUUGGCgaGCUg -3'
miRNA:   3'- aGUGGGGGCGa------UUUUC-GGACCGg-CGG- -5'
24368 5' -58.3 NC_005264.1 + 158835 0.66 0.803952
Target:  5'- -aGCCCCUGgUGggcgagGAGGCaUGuGCCGCCc -3'
miRNA:   3'- agUGGGGGCgAU------UUUCGgAC-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 147260 0.66 0.821115
Target:  5'- gCugCgCCCGC---AAGCUUGGCCacgagcugcacGCCg -3'
miRNA:   3'- aGugG-GGGCGauuUUCGGACCGG-----------CGG- -5'
24368 5' -58.3 NC_005264.1 + 77162 0.66 0.821115
Target:  5'- cCGCgaaCUCCGCUu---GCCaGGUCGCCu -3'
miRNA:   3'- aGUG---GGGGCGAuuuuCGGaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 161846 0.66 0.812613
Target:  5'- cCGCCggUCCGCgaggggGGAGGCCcaccuGCCGCCc -3'
miRNA:   3'- aGUGG--GGGCGa-----UUUUCGGac---CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 61818 0.66 0.821115
Target:  5'- gCAUCgCCGggcaguGCCUGGCuCGCCu -3'
miRNA:   3'- aGUGGgGGCgauuuuCGGACCG-GCGG- -5'
24368 5' -58.3 NC_005264.1 + 130584 0.66 0.821115
Target:  5'- uUCAgagCCCGCgauuGGCCUagaGGCCGCUu -3'
miRNA:   3'- -AGUgg-GGGCGauuuUCGGA---CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 157334 0.66 0.807435
Target:  5'- aCGCCUUCGC-GGAGGCCgacgaggguuggcgGGCCcugGCCg -3'
miRNA:   3'- aGUGGGGGCGaUUUUCGGa-------------CCGG---CGG- -5'
24368 5' -58.3 NC_005264.1 + 162701 0.66 0.803952
Target:  5'- gCGCgCCgGCguuAAGGC--GGCCGCCg -3'
miRNA:   3'- aGUGgGGgCGau-UUUCGgaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 109768 0.66 0.803952
Target:  5'- aCACUCCCGCUGGu--CCgcGGCCaCCu -3'
miRNA:   3'- aGUGGGGGCGAUUuucGGa-CCGGcGG- -5'
24368 5' -58.3 NC_005264.1 + 150419 0.66 0.829451
Target:  5'- gCGCCUCCaaGCacguAGCg-GGCCGCCu -3'
miRNA:   3'- aGUGGGGG--CGauuuUCGgaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 37594 0.66 0.804825
Target:  5'- gUCGCgCCgaGCUucucugaccugauacAAGGCUUGGCCGCUc -3'
miRNA:   3'- -AGUGgGGg-CGAu--------------UUUCGGACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 92657 0.66 0.829451
Target:  5'- -gGCCCUCGCgccgcaaagAGGAGuuCCUgaaccuacgcGGCCGCCu -3'
miRNA:   3'- agUGGGGGCGa--------UUUUC--GGA----------CCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.