miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 5' -58.3 NC_005264.1 + 130146 1.12 0.001097
Target:  5'- cUCACCCCCGCUAAAAGCCUGGCCGCCa -3'
miRNA:   3'- -AGUGGGGGCGAUUUUCGGACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 40821 0.78 0.213508
Target:  5'- gUCGCCgagacucaagauCCCGCUAu-GGCC-GGCCGCCg -3'
miRNA:   3'- -AGUGG------------GGGCGAUuuUCGGaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 48178 0.76 0.310669
Target:  5'- gCACCCCCGCUucaugGAGAcGCUacGGCCGUCu -3'
miRNA:   3'- aGUGGGGGCGA-----UUUU-CGGa-CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 157742 0.76 0.313484
Target:  5'- cUCGCCCCCagGCgUAGAGGaCCccuccccggacgggcUGGCCGCCu -3'
miRNA:   3'- -AGUGGGGG--CG-AUUUUC-GG---------------ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 38716 0.76 0.313484
Target:  5'- cUCGCCCCCagGCgUAGAGGaCCccuccccggacgggcUGGCCGCCu -3'
miRNA:   3'- -AGUGGGGG--CG-AUUUUC-GG---------------ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 160329 0.75 0.317744
Target:  5'- gUCGCCCCCcgcGCUGAAGucgcGCgaGGCcCGCCg -3'
miRNA:   3'- -AGUGGGGG---CGAUUUU----CGgaCCG-GCGG- -5'
24368 5' -58.3 NC_005264.1 + 41302 0.75 0.317744
Target:  5'- gUCGCCCCCcgcGCUGAAGucgcGCgaGGCcCGCCg -3'
miRNA:   3'- -AGUGGGGG---CGAUUUU----CGgaCCG-GCGG- -5'
24368 5' -58.3 NC_005264.1 + 9331 0.75 0.347246
Target:  5'- uUCGUCCCCGCcAGGGGC--GGCCGCCg -3'
miRNA:   3'- -AGUGGGGGCGaUUUUCGgaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 95095 0.75 0.354921
Target:  5'- aCGCCCUgauuuCGCUGAGAGCCUuugccccgaaGCCGCCc -3'
miRNA:   3'- aGUGGGG-----GCGAUUUUCGGAc---------CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 59118 0.75 0.354921
Target:  5'- cCGCCgCCGCUGAu-GCC-GcGCCGCCg -3'
miRNA:   3'- aGUGGgGGCGAUUuuCGGaC-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 77863 0.74 0.362715
Target:  5'- cCGCCacgaCGCUAAcgcagcAGCCUGGCCGCa -3'
miRNA:   3'- aGUGGgg--GCGAUUu-----UCGGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 80771 0.74 0.362715
Target:  5'- aCcCCUCCGCgcagAGAucuGGCCUGGCCGUa -3'
miRNA:   3'- aGuGGGGGCGa---UUU---UCGGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 131327 0.74 0.370627
Target:  5'- --cUCCCCGCcc-GAGCCUGgaGCCGCCu -3'
miRNA:   3'- aguGGGGGCGauuUUCGGAC--CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 12300 0.74 0.370627
Target:  5'- --cUCCCCGCcc-GAGCCUGgaGCCGCCu -3'
miRNA:   3'- aguGGGGGCGauuUUCGGAC--CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 32589 0.74 0.40175
Target:  5'- gCACCCgCGCccaaaagguucgAAAGGCCaagaaggucuUGGCCGCCa -3'
miRNA:   3'- aGUGGGgGCGa-----------UUUUCGG----------ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 104840 0.73 0.411918
Target:  5'- cCGCCggggCCGCU--GAGCCacGGCCGCCg -3'
miRNA:   3'- aGUGGg---GGCGAuuUUCGGa-CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 56831 0.73 0.420512
Target:  5'- -gGCCCuaGCUAGcGGCUcgUGGCUGCCa -3'
miRNA:   3'- agUGGGggCGAUUuUCGG--ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 102221 0.73 0.438019
Target:  5'- -uGCUCCUGCgc-GAGCC-GGCUGCCg -3'
miRNA:   3'- agUGGGGGCGauuUUCGGaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 114435 0.73 0.438019
Target:  5'- -uGCCCCCacccGCU-----CCUGGCCGCCg -3'
miRNA:   3'- agUGGGGG----CGAuuuucGGACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 91019 0.73 0.455937
Target:  5'- uUCGCgaCCCCGCgggcGGCUUcGGCCGCUa -3'
miRNA:   3'- -AGUG--GGGGCGauuuUCGGA-CCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.