miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24369 5' -49.8 NC_005264.1 + 15868 0.66 0.997482
Target:  5'- cUCGAGGAgGCucc-GCAGcCUGcGGCc -3'
miRNA:   3'- uAGCUCUUgCGuauaUGUCaGAC-CCG- -5'
24369 5' -49.8 NC_005264.1 + 31783 0.66 0.99701
Target:  5'- cGUCucGGACGCAUu--CGGgucgucUCUGGGCu -3'
miRNA:   3'- -UAGcuCUUGCGUAuauGUC------AGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 85566 0.66 0.995846
Target:  5'- uUCGuucGAGCGCGgcaccGUGCAccacGUgCUGGGCa -3'
miRNA:   3'- uAGCu--CUUGCGUa----UAUGU----CA-GACCCG- -5'
24369 5' -49.8 NC_005264.1 + 22320 0.67 0.995138
Target:  5'- aGUCuGGcGCGCGgg-GCaaugGGUCUGGGCu -3'
miRNA:   3'- -UAGcUCuUGCGUauaUG----UCAGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 125528 0.67 0.994335
Target:  5'- uGUCGAGAgaagGCGgGUGUugcuGCGG-CUGcGGCg -3'
miRNA:   3'- -UAGCUCU----UGCgUAUA----UGUCaGAC-CCG- -5'
24369 5' -49.8 NC_005264.1 + 93166 0.67 0.994335
Target:  5'- cGUCG-GGGCGCcgcucCAGaCUGGGCg -3'
miRNA:   3'- -UAGCuCUUGCGuauauGUCaGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 51848 0.67 0.993428
Target:  5'- gGUCauGGAGCGCAguagggagACGGUCUccucGGGCg -3'
miRNA:   3'- -UAGc-UCUUGCGUaua-----UGUCAGA----CCCG- -5'
24369 5' -49.8 NC_005264.1 + 75728 0.67 0.992408
Target:  5'- -cCGcGGGCGCcgGaggcCAGUCUGGGUg -3'
miRNA:   3'- uaGCuCUUGCGuaUau--GUCAGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 100563 0.67 0.992299
Target:  5'- gAUCGcgggacaAGGGCGCAaagcgccgucguUGUACAGcCUGuGGCg -3'
miRNA:   3'- -UAGC-------UCUUGCGU------------AUAUGUCaGAC-CCG- -5'
24369 5' -49.8 NC_005264.1 + 1646 0.67 0.991266
Target:  5'- uAUCGGG---GCAUAUAgGGUacaUGGGCg -3'
miRNA:   3'- -UAGCUCuugCGUAUAUgUCAg--ACCCG- -5'
24369 5' -49.8 NC_005264.1 + 43980 0.68 0.989993
Target:  5'- -aUGAGGACGCAgaacgcgagGCGGaCUuGGGCa -3'
miRNA:   3'- uaGCUCUUGCGUaua------UGUCaGA-CCCG- -5'
24369 5' -49.8 NC_005264.1 + 45171 0.68 0.988579
Target:  5'- --gGAGAGCGCGgcagcgaACGGUCUGG-Ca -3'
miRNA:   3'- uagCUCUUGCGUaua----UGUCAGACCcG- -5'
24369 5' -49.8 NC_005264.1 + 156160 0.68 0.987014
Target:  5'- -aCGaAGGGCGCAUAUgcGCGGcUUUGcGGCg -3'
miRNA:   3'- uaGC-UCUUGCGUAUA--UGUC-AGAC-CCG- -5'
24369 5' -49.8 NC_005264.1 + 25724 0.68 0.987014
Target:  5'- uUCGAGAcCGCGUAc-CAGUUaGGGUc -3'
miRNA:   3'- uAGCUCUuGCGUAUauGUCAGaCCCG- -5'
24369 5' -49.8 NC_005264.1 + 55152 0.68 0.98529
Target:  5'- -gUGcuGGCGCAgcgUAUGCGGccUCUGGGCg -3'
miRNA:   3'- uaGCucUUGCGU---AUAUGUC--AGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 27494 0.68 0.983396
Target:  5'- -aCGAGAauacuagagGCGCAgugGCGGgCUGGGUc -3'
miRNA:   3'- uaGCUCU---------UGCGUauaUGUCaGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 20840 0.69 0.973941
Target:  5'- -gCGAGAugcCGUAUuccACAGUCUGGaGCc -3'
miRNA:   3'- uaGCUCUu--GCGUAua-UGUCAGACC-CG- -5'
24369 5' -49.8 NC_005264.1 + 9965 0.69 0.973941
Target:  5'- cGUUGAGAGCaCGUAUgGCAGagUGGGUu -3'
miRNA:   3'- -UAGCUCUUGcGUAUA-UGUCagACCCG- -5'
24369 5' -49.8 NC_005264.1 + 126777 0.69 0.971065
Target:  5'- -aCGGGcucucCGCGUcgGCAGUC-GGGCa -3'
miRNA:   3'- uaGCUCuu---GCGUAuaUGUCAGaCCCG- -5'
24369 5' -49.8 NC_005264.1 + 7751 0.69 0.971065
Target:  5'- -aCGGGcucucCGCGUcgGCAGUC-GGGCa -3'
miRNA:   3'- uaGCUCuu---GCGUAuaUGUCAGaCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.