miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 3' -53.3 NC_005264.1 + 85307 0.7 0.840344
Target:  5'- gCGCCuucuuGAGCGauuggGCCGAACggacccugaCCGACUCa -3'
miRNA:   3'- -GCGGu----UUCGCga---UGGUUUG---------GGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 138609 0.7 0.840344
Target:  5'- gCGCCGGAGUGUcuUACUAu-CCCGGCg- -3'
miRNA:   3'- -GCGGUUUCGCG--AUGGUuuGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 99040 0.7 0.848547
Target:  5'- aGCgCAAAGCGggGCCuccCCCGAgUCg -3'
miRNA:   3'- gCG-GUUUCGCgaUGGuuuGGGCUgAG- -5'
24370 3' -53.3 NC_005264.1 + 4786 0.7 0.848547
Target:  5'- gCGCCGuucGCGC-ACCuccaCCGACUCa -3'
miRNA:   3'- -GCGGUuu-CGCGaUGGuuugGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 111731 0.7 0.848547
Target:  5'- gCGUCGAGGCGCgagcagACCGcAGCaCCGGCg- -3'
miRNA:   3'- -GCGGUUUCGCGa-----UGGU-UUG-GGCUGag -5'
24370 3' -53.3 NC_005264.1 + 85427 0.7 0.854168
Target:  5'- aCGCCGaccgcgcggacaggGAGCGCuUGCCGgcgucuGGgCCGACUCc -3'
miRNA:   3'- -GCGGU--------------UUCGCG-AUGGU------UUgGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 60538 0.7 0.855756
Target:  5'- aGCCAuuGCGCUcuggcacGCCuguGCCCGuuUCg -3'
miRNA:   3'- gCGGUuuCGCGA-------UGGuu-UGGGCugAG- -5'
24370 3' -53.3 NC_005264.1 + 161387 0.7 0.856547
Target:  5'- cCGCC--GGCGaugGCCGGugCUGGCUCc -3'
miRNA:   3'- -GCGGuuUCGCga-UGGUUugGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 91059 0.7 0.856547
Target:  5'- aGCCGAGGCGCUucugcaacggcGCCAgcAGgUCGGCUa -3'
miRNA:   3'- gCGGUUUCGCGA-----------UGGU--UUgGGCUGAg -5'
24370 3' -53.3 NC_005264.1 + 42360 0.7 0.856547
Target:  5'- cCGCC--GGCGaugGCCGGugCUGGCUCc -3'
miRNA:   3'- -GCGGuuUCGCga-UGGUUugGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 141075 0.7 0.863566
Target:  5'- cCGCCAAaguuacGGCGCUcaagacggccgccGCCGAagGCCCcACUCc -3'
miRNA:   3'- -GCGGUU------UCGCGA-------------UGGUU--UGGGcUGAG- -5'
24370 3' -53.3 NC_005264.1 + 89455 0.69 0.871907
Target:  5'- aGCCGccGCGCUACCAuuucGCCgcaGACa- -3'
miRNA:   3'- gCGGUuuCGCGAUGGUu---UGGg--CUGag -5'
24370 3' -53.3 NC_005264.1 + 24962 0.69 0.871907
Target:  5'- -aCCAGGGCGCUgcGCCGAAUCgGAaaCUCu -3'
miRNA:   3'- gcGGUUUCGCGA--UGGUUUGGgCU--GAG- -5'
24370 3' -53.3 NC_005264.1 + 66634 0.69 0.879255
Target:  5'- gGcCCGAGGCaaGCUGCCAAua-CGACUCc -3'
miRNA:   3'- gC-GGUUUCG--CGAUGGUUuggGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 33026 0.69 0.886376
Target:  5'- aCGCUAcGGgGCUccGCCAGcuACgCGACUCa -3'
miRNA:   3'- -GCGGUuUCgCGA--UGGUU--UGgGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 158081 0.69 0.890536
Target:  5'- gGCCGAGuucGCGCggcgguccacccCCGGACgCCGGCUCg -3'
miRNA:   3'- gCGGUUU---CGCGau----------GGUUUG-GGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 39054 0.69 0.890536
Target:  5'- gGCCGAGuucGCGCggcgguccacccCCGGACgCCGGCUCg -3'
miRNA:   3'- gCGGUUU---CGCGau----------GGUUUG-GGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 23150 0.69 0.891221
Target:  5'- aGCCcaggcGAGUGCUuggaauuuucuaugGCCAuuauugcGCCCGGCUCg -3'
miRNA:   3'- gCGGu----UUCGCGA--------------UGGUu------UGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 93165 0.69 0.893263
Target:  5'- cCGUCGGGGCGCcgcuCCAGACUgGGCg- -3'
miRNA:   3'- -GCGGUUUCGCGau--GGUUUGGgCUGag -5'
24370 3' -53.3 NC_005264.1 + 134951 0.69 0.893263
Target:  5'- uCGCCGAGaCGCUgGCCAGACaCGACa- -3'
miRNA:   3'- -GCGGUUUcGCGA-UGGUUUGgGCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.