Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24370 | 5' | -62.8 | NC_005264.1 | + | 162691 | 0.72 | 0.287553 |
Target: 5'- uCGGCGCGcugcgcgccGGcGUUaaGGCGGcCGCCGGGGa -3' miRNA: 3'- -GCCGCGU---------CC-CAAa-CCGCC-GCGGCCUC- -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 162235 | 0.68 | 0.531171 |
Target: 5'- cCGGCGgGGGGggggggggcuacGGCGGgGCUGGcGGg -3' miRNA: 3'- -GCCGCgUCCCaaa---------CCGCCgCGGCC-UC- -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 158428 | 0.67 | 0.583599 |
Target: 5'- uCGGCGaAGGGggcacuGCGcugcucaGCGCCGGAGa -3' miRNA: 3'- -GCCGCgUCCCaaac--CGC-------CGCGGCCUC- -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 157009 | 0.69 | 0.471591 |
Target: 5'- gCGGC-CAGGcGagUGGCGGCcaccgccGCCGGAc -3' miRNA: 3'- -GCCGcGUCC-CaaACCGCCG-------CGGCCUc -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 156165 | 0.73 | 0.256416 |
Target: 5'- gGGCGCAuaugcgcggcuuuGcGGcgUGGCGGCGCCGGc- -3' miRNA: 3'- gCCGCGU-------------C-CCaaACCGCCGCGGCCuc -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 155428 | 0.66 | 0.611684 |
Target: 5'- cCGGCGCAcgaaccaaUGGacgaCGGCGCCGGGGc -3' miRNA: 3'- -GCCGCGUcccaa---ACC----GCCGCGGCCUC- -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 155268 | 0.74 | 0.245542 |
Target: 5'- gCGGCGCGGGGUa-GGCGGCGg-GGAc -3' miRNA: 3'- -GCCGCGUCCCAaaCCGCCGCggCCUc -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 154807 | 0.71 | 0.342248 |
Target: 5'- aGGCGgAGGGcgcGGUGGCGCCGu-- -3' miRNA: 3'- gCCGCgUCCCaaaCCGCCGCGGCcuc -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 146945 | 0.66 | 0.642803 |
Target: 5'- uGGCGCAGaGGc-UGGaUGGCGCU-GAGg -3' miRNA: 3'- gCCGCGUC-CCaaACC-GCCGCGGcCUC- -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 129500 | 1.08 | 0.00086 |
Target: 5'- gCGGCGCAGGGUUUGGCGGCGCCGGAGg -3' miRNA: 3'- -GCCGCGUCCCAAACCGCCGCGGCCUC- -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 126898 | 0.67 | 0.565333 |
Target: 5'- gCGGCGUcGGcGccccagauGCGGCGUCGGAGg -3' miRNA: 3'- -GCCGCGuCC-Caaac----CGCCGCGGCCUC- -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 124980 | 0.66 | 0.642803 |
Target: 5'- -cGCGCAGGGca--GCGGCGCauucgCGGAu -3' miRNA: 3'- gcCGCGUCCCaaacCGCCGCG-----GCCUc -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 121918 | 0.67 | 0.546271 |
Target: 5'- gCGGCGCGGcGGggagGGCgacGGCGagagcgaCGGAGu -3' miRNA: 3'- -GCCGCGUC-CCaaa-CCG---CCGCg------GCCUC- -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 120051 | 0.69 | 0.454814 |
Target: 5'- gGGUcuaGCGGGGgggaaguaggUGGCGGaCGCCGGc- -3' miRNA: 3'- gCCG---CGUCCCaa--------ACCGCC-GCGGCCuc -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 116527 | 0.68 | 0.527419 |
Target: 5'- gCGGUcuucgGUGGGGUcgUUGGgGGCuaCGGAGg -3' miRNA: 3'- -GCCG-----CGUCCCA--AACCgCCGcgGCCUC- -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 115948 | 0.66 | 0.614599 |
Target: 5'- gCGGCGCAGGcuaggagguacGCGGCGCCcGAc -3' miRNA: 3'- -GCCGCGUCCcaaac------CGCCGCGGcCUc -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 109637 | 0.67 | 0.584564 |
Target: 5'- gGGCGCGacGGUUgcaacucGCGGCcCCGGAGa -3' miRNA: 3'- gCCGCGUc-CCAAac-----CGCCGcGGCCUC- -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 109350 | 0.66 | 0.633076 |
Target: 5'- cCGGCGCAuGGGgcuucuaUGGUGGgggaguucggcCGUCGGAa -3' miRNA: 3'- -GCCGCGU-CCCaa-----ACCGCC-----------GCGGCCUc -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 109088 | 0.66 | 0.652522 |
Target: 5'- uGGCGaAGacga-GGaCGGCGCCGGAGa -3' miRNA: 3'- gCCGCgUCccaaaCC-GCCGCGGCCUC- -5' |
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24370 | 5' | -62.8 | NC_005264.1 | + | 101930 | 0.66 | 0.623349 |
Target: 5'- uGGCGCGcgaaacUGGCGGCGUCGGc- -3' miRNA: 3'- gCCGCGUcccaa-ACCGCCGCGGCCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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