miRNA display CGI


Results 21 - 40 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 131217 0.71 0.548757
Target:  5'- -cCCCGAGGCauggucgcagggcgaUGCGCGCCgCcUCGCCa -3'
miRNA:   3'- cuGGGCUUCGg--------------AUGCGCGG-GcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 85848 0.71 0.557501
Target:  5'- gGACCCGGagggaGGCCcauagaugGCGUGCuuGUgACCa -3'
miRNA:   3'- -CUGGGCU-----UCGGa-------UGCGCGggCAgUGG- -5'
24372 3' -58.8 NC_005264.1 + 86731 0.71 0.567262
Target:  5'- aGACCCccucuGAuGCCgcgcuguuCGCGCCCGUagaGCCg -3'
miRNA:   3'- -CUGGG-----CUuCGGau------GCGCGGGCAg--UGG- -5'
24372 3' -58.8 NC_005264.1 + 144411 0.71 0.567262
Target:  5'- cGACCCcgcGCCgagcgagaggGCGCGCCUG-CGCCg -3'
miRNA:   3'- -CUGGGcuuCGGa---------UGCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 44871 0.7 0.577067
Target:  5'- aGAUCUGcAGCCUggggagGCGgGCCCGUCGUCg -3'
miRNA:   3'- -CUGGGCuUCGGA------UGCgCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 6245 0.7 0.586908
Target:  5'- aGACuuGccGCCUccguCGCGgUCGUCGCCg -3'
miRNA:   3'- -CUGggCuuCGGAu---GCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 122790 0.7 0.586908
Target:  5'- --gCCGggGCgCUGCGgGCCCuugGUCgACCg -3'
miRNA:   3'- cugGGCuuCG-GAUGCgCGGG---CAG-UGG- -5'
24372 3' -58.8 NC_005264.1 + 125272 0.7 0.586908
Target:  5'- aGACuuGccGCCUccguCGCGgUCGUCGCCg -3'
miRNA:   3'- -CUGggCuuCGGAu---GCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 3764 0.7 0.586908
Target:  5'- --gCCGggGCgCUGCGgGCCCuugGUCgACCg -3'
miRNA:   3'- cugGGCuuCG-GAUGCgCGGG---CAG-UGG- -5'
24372 3' -58.8 NC_005264.1 + 158390 0.7 0.586908
Target:  5'- cGCCUaugGGAGCCguauaugccCGcCGCCCGUCACUa -3'
miRNA:   3'- cUGGG---CUUCGGau-------GC-GCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 86485 0.7 0.626517
Target:  5'- uACCaacgcGCCUGCGCGCa-GUCGCCg -3'
miRNA:   3'- cUGGgcuu-CGGAUGCGCGggCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 155086 0.69 0.636447
Target:  5'- uGCCCGAcuGCCgACGCggagaGCCCGUUuCCg -3'
miRNA:   3'- cUGGGCUu-CGGaUGCG-----CGGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 36059 0.69 0.636447
Target:  5'- uGCCCGAcuGCCgACGCggagaGCCCGUUuCCg -3'
miRNA:   3'- cUGGGCUu-CGGaUGCG-----CGGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 100779 0.69 0.646373
Target:  5'- gGGCCC-AAGCCaUGCGCGCCCaa-AUCu -3'
miRNA:   3'- -CUGGGcUUCGG-AUGCGCGGGcagUGG- -5'
24372 3' -58.8 NC_005264.1 + 106421 0.69 0.646373
Target:  5'- aGACCCGAAGCUcgACgGCGCCgCGcUCGa- -3'
miRNA:   3'- -CUGGGCUUCGGa-UG-CGCGG-GC-AGUgg -5'
24372 3' -58.8 NC_005264.1 + 110979 0.69 0.653316
Target:  5'- cGCCCGAGGagaccgucucCCUAcugcgcuccaugacCGUGCCCGUCAUUc -3'
miRNA:   3'- cUGGGCUUC----------GGAU--------------GCGCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 11799 0.69 0.671126
Target:  5'- aGCCCGAGGCgguuccgcagcauccCUaucgauggcgcuguaGCGCgcaucggacacgcgGCCCGUCGCCg -3'
miRNA:   3'- cUGGGCUUCG---------------GA---------------UGCG--------------CGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 130825 0.69 0.671126
Target:  5'- aGCCCGAGGCgguuccgcagcauccCUaucgauggcgcuguaGCGCgcaucggacacgcgGCCCGUCGCCg -3'
miRNA:   3'- cUGGGCUUCG---------------GA---------------UGCG--------------CGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 77902 0.69 0.672113
Target:  5'- cACCCGgcGCCacacuacaacagaGCGCGCagccaUCGUCGCCa -3'
miRNA:   3'- cUGGGCuuCGGa------------UGCGCG-----GGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 12948 0.69 0.676058
Target:  5'- aGACgCCGuuGCCUACcgggcgGCGCgCGcCGCCg -3'
miRNA:   3'- -CUG-GGCuuCGGAUG------CGCGgGCaGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.