miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 128701 1.12 0.001186
Target:  5'- cGACCCGAAGCCUACGCGCCCGUCACCa -3'
miRNA:   3'- -CUGGGCUUCGGAUGCGCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 79723 0.82 0.128281
Target:  5'- -cUCCGcGGCCUugGCGCCCGUCGgCg -3'
miRNA:   3'- cuGGGCuUCGGAugCGCGGGCAGUgG- -5'
24372 3' -58.8 NC_005264.1 + 37802 0.77 0.24764
Target:  5'- -cCCCGGAGCCUcCcCGCCCGUCgggGCCg -3'
miRNA:   3'- cuGGGCUUCGGAuGcGCGGGCAG---UGG- -5'
24372 3' -58.8 NC_005264.1 + 156828 0.77 0.24764
Target:  5'- -cCCCGGAGCCUcCcCGCCCGUCgggGCCg -3'
miRNA:   3'- cuGGGCUUCGGAuGcGCGGGCAG---UGG- -5'
24372 3' -58.8 NC_005264.1 + 44433 0.74 0.394412
Target:  5'- -uCCCGAGGCCUAUuauugguuugGUGCCCaUUACCa -3'
miRNA:   3'- cuGGGCUUCGGAUG----------CGCGGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 78415 0.73 0.419497
Target:  5'- gGGCUagUGGuAGCCUACGCGUUCGUCGCg -3'
miRNA:   3'- -CUGG--GCU-UCGGAUGCGCGGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 13182 0.73 0.436747
Target:  5'- cGACCUac-GCgCUGCGCGCggauCCGUCGCCg -3'
miRNA:   3'- -CUGGGcuuCG-GAUGCGCG----GGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 132209 0.73 0.436747
Target:  5'- cGACCUac-GCgCUGCGCGCggauCCGUCGCCg -3'
miRNA:   3'- -CUGGGcuuCG-GAUGCGCG----GGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 43897 0.73 0.454399
Target:  5'- gGGCgCCGGAGaCgauaGCGCGgCCGUCGCCu -3'
miRNA:   3'- -CUG-GGCUUCgGa---UGCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 125168 0.72 0.463368
Target:  5'- ---gCGAGGgCcGCGCGCCCGUCGCg -3'
miRNA:   3'- cuggGCUUCgGaUGCGCGGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 6141 0.72 0.463368
Target:  5'- ---gCGAGGgCcGCGCGCCCGUCGCg -3'
miRNA:   3'- cuggGCUUCgGaUGCGCGGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 67478 0.72 0.509526
Target:  5'- aACCCGAGGCCgggcCGcCGCCC--CGCCg -3'
miRNA:   3'- cUGGGCUUCGGau--GC-GCGGGcaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 55623 0.71 0.528529
Target:  5'- uGGCgCCGAAuGCCaaccGCGCGCgCCGcCGCCu -3'
miRNA:   3'- -CUG-GGCUU-CGGa---UGCGCG-GGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 116991 0.71 0.528529
Target:  5'- aGACUCGAAGUCUugGgGgCgGUCugCg -3'
miRNA:   3'- -CUGGGCUUCGGAugCgCgGgCAGugG- -5'
24372 3' -58.8 NC_005264.1 + 131974 0.71 0.538129
Target:  5'- aGACgCCGuuGCCUACcgggcgGCGCgCCGcCGCCg -3'
miRNA:   3'- -CUG-GGCuuCGGAUG------CGCG-GGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 97717 0.71 0.538129
Target:  5'- --aCCGAGGgCUugGCGUCgCGuUCACCg -3'
miRNA:   3'- cugGGCUUCgGAugCGCGG-GC-AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 92250 0.71 0.547788
Target:  5'- aGGCCCGccucGCCaaGCGCGCUCuUCGCCa -3'
miRNA:   3'- -CUGGGCuu--CGGa-UGCGCGGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 82123 0.71 0.547788
Target:  5'- uACCUGuauauaguacuAAGCggUGCGCGCCCGUUGCCu -3'
miRNA:   3'- cUGGGC-----------UUCGg-AUGCGCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 60347 0.71 0.547788
Target:  5'- -cCCCG-AGCCcaUAgGCGCCCGagcCACCa -3'
miRNA:   3'- cuGGGCuUCGG--AUgCGCGGGCa--GUGG- -5'
24372 3' -58.8 NC_005264.1 + 12190 0.71 0.548757
Target:  5'- -cCCCGAGGCauggucgcagggcgaUGCGCGCCgCcUCGCCa -3'
miRNA:   3'- cuGGGCUUCGg--------------AUGCGCGG-GcAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.