miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 223 0.66 0.815445
Target:  5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3'
miRNA:   3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 862 0.67 0.798306
Target:  5'- -cUCCGAGGCgUugcCGCGCCCGgacgUACg -3'
miRNA:   3'- cuGGGCUUCGgAu--GCGCGGGCa---GUGg -5'
24372 3' -58.8 NC_005264.1 + 1932 0.66 0.823783
Target:  5'- -cUCCGGcaagAGUCUguGCGCGgCCGUUGCCc -3'
miRNA:   3'- cuGGGCU----UCGGA--UGCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 2841 0.67 0.798306
Target:  5'- gGGCCgGucGCgCU-CGCGCC-GUCGCCc -3'
miRNA:   3'- -CUGGgCuuCG-GAuGCGCGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 3264 0.66 0.823783
Target:  5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3'
miRNA:   3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 3620 0.66 0.815445
Target:  5'- gGGCCgCGAGGgCggGCGCGCUgacauuCGUCGCg -3'
miRNA:   3'- -CUGG-GCUUCgGa-UGCGCGG------GCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 3764 0.7 0.586908
Target:  5'- --gCCGggGCgCUGCGgGCCCuugGUCgACCg -3'
miRNA:   3'- cugGGCuuCG-GAUGCgCGGG---CAG-UGG- -5'
24372 3' -58.8 NC_005264.1 + 5944 0.66 0.831148
Target:  5'- cGGCCCGAAcCCgcgGCGuUGCCUGUUgacgcacaggaauGCCa -3'
miRNA:   3'- -CUGGGCUUcGGa--UGC-GCGGGCAG-------------UGG- -5'
24372 3' -58.8 NC_005264.1 + 6141 0.72 0.463368
Target:  5'- ---gCGAGGgCcGCGCGCCCGUCGCg -3'
miRNA:   3'- cuggGCUUCgGaUGCGCGGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 6245 0.7 0.586908
Target:  5'- aGACuuGccGCCUccguCGCGgUCGUCGCCg -3'
miRNA:   3'- -CUGggCuuCGGAu---GCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 7995 0.68 0.723788
Target:  5'- gGGCCgccauugCGggGCCggcagAgGCGCCCGcCACg -3'
miRNA:   3'- -CUGG-------GCuuCGGa----UgCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 8694 0.67 0.797433
Target:  5'- aACCCcuuGAAGaacucgcUCUGCGCGCgCGUgGCCg -3'
miRNA:   3'- cUGGG---CUUC-------GGAUGCGCGgGCAgUGG- -5'
24372 3' -58.8 NC_005264.1 + 9028 0.68 0.734292
Target:  5'- -uCCCGAcGCgUuCGCGCCUggcuuggggaaaGUCACCg -3'
miRNA:   3'- cuGGGCUuCGgAuGCGCGGG------------CAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 10058 0.67 0.753125
Target:  5'- aGGCCCGAAGCCUuccgGCaaCUGUUACa -3'
miRNA:   3'- -CUGGGCUUCGGAug--CGcgGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 10092 0.66 0.831958
Target:  5'- cGCCgGggGCau-CGCGgCCGUguCCg -3'
miRNA:   3'- cUGGgCuuCGgauGCGCgGGCAguGG- -5'
24372 3' -58.8 NC_005264.1 + 11799 0.69 0.671126
Target:  5'- aGCCCGAGGCgguuccgcagcauccCUaucgauggcgcuguaGCGCgcaucggacacgcgGCCCGUCGCCg -3'
miRNA:   3'- cUGGGCUUCG---------------GA---------------UGCG--------------CGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 11860 0.66 0.840751
Target:  5'- cGACCCu-AGCCUACGguagaacgccuugcaGCCgGUgCACCc -3'
miRNA:   3'- -CUGGGcuUCGGAUGCg--------------CGGgCA-GUGG- -5'
24372 3' -58.8 NC_005264.1 + 12190 0.71 0.548757
Target:  5'- -cCCCGAGGCauggucgcagggcgaUGCGCGCCgCcUCGCCa -3'
miRNA:   3'- cuGGGCUUCGg--------------AUGCGCGG-GcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 12948 0.69 0.676058
Target:  5'- aGACgCCGuuGCCUACcgggcgGCGCgCGcCGCCg -3'
miRNA:   3'- -CUG-GGCuuCGGAUG------CGCGgGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 13182 0.73 0.436747
Target:  5'- cGACCUac-GCgCUGCGCGCggauCCGUCGCCg -3'
miRNA:   3'- -CUGGGcuuCG-GAUGCGCG----GGCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.