Results 1 - 20 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 29289 | 0.69 | 0.685896 |
Target: 5'- -uCCgGGAGCCgguaccucACGcCGCCCGUUACa -3' miRNA: 3'- cuGGgCUUCGGa-------UGC-GCGGGCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 125272 | 0.7 | 0.586908 |
Target: 5'- aGACuuGccGCCUccguCGCGgUCGUCGCCg -3' miRNA: 3'- -CUGggCuuCGGAu---GCGCgGGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 122790 | 0.7 | 0.586908 |
Target: 5'- --gCCGggGCgCUGCGgGCCCuugGUCgACCg -3' miRNA: 3'- cugGGCuuCG-GAUGCgCGGG---CAG-UGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 155086 | 0.69 | 0.636447 |
Target: 5'- uGCCCGAcuGCCgACGCggagaGCCCGUUuCCg -3' miRNA: 3'- cUGGGCUu-CGGaUGCG-----CGGGCAGuGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 100779 | 0.69 | 0.646373 |
Target: 5'- gGGCCC-AAGCCaUGCGCGCCCaa-AUCu -3' miRNA: 3'- -CUGGGcUUCGG-AUGCGCGGGcagUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 130825 | 0.69 | 0.671126 |
Target: 5'- aGCCCGAGGCgguuccgcagcauccCUaucgauggcgcuguaGCGCgcaucggacacgcgGCCCGUCGCCg -3' miRNA: 3'- cUGGGCUUCG---------------GA---------------UGCG--------------CGGGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 77902 | 0.69 | 0.672113 |
Target: 5'- cACCCGgcGCCacacuacaacagaGCGCGCagccaUCGUCGCCa -3' miRNA: 3'- cUGGGCuuCGGa------------UGCGCG-----GGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 30444 | 0.69 | 0.685896 |
Target: 5'- aGCUCGu-GCCUGCG-GCCaCGuUCACCa -3' miRNA: 3'- cUGGGCuuCGGAUGCgCGG-GC-AGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 15875 | 0.69 | 0.685896 |
Target: 5'- aGGCuCCGcAGCCUGCG-GCCUcagCGCCa -3' miRNA: 3'- -CUG-GGCuUCGGAUGCgCGGGca-GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 86731 | 0.71 | 0.567262 |
Target: 5'- aGACCCccucuGAuGCCgcgcuguuCGCGCCCGUagaGCCg -3' miRNA: 3'- -CUGGG-----CUuCGGau------GCGCGGGCAg--UGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 85848 | 0.71 | 0.557501 |
Target: 5'- gGACCCGGagggaGGCCcauagaugGCGUGCuuGUgACCa -3' miRNA: 3'- -CUGGGCU-----UCGGa-------UGCGCGggCAgUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 131217 | 0.71 | 0.548757 |
Target: 5'- -cCCCGAGGCauggucgcagggcgaUGCGCGCCgCcUCGCCa -3' miRNA: 3'- cuGGGCUUCGg--------------AUGCGCGG-GcAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 156828 | 0.77 | 0.24764 |
Target: 5'- -cCCCGGAGCCUcCcCGCCCGUCgggGCCg -3' miRNA: 3'- cuGGGCUUCGGAuGcGCGGGCAG---UGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 44433 | 0.74 | 0.394412 |
Target: 5'- -uCCCGAGGCCUAUuauugguuugGUGCCCaUUACCa -3' miRNA: 3'- cuGGGCUUCGGAUG----------CGCGGGcAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 78415 | 0.73 | 0.419497 |
Target: 5'- gGGCUagUGGuAGCCUACGCGUUCGUCGCg -3' miRNA: 3'- -CUGG--GCU-UCGGAUGCGCGGGCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 132209 | 0.73 | 0.436747 |
Target: 5'- cGACCUac-GCgCUGCGCGCggauCCGUCGCCg -3' miRNA: 3'- -CUGGGcuuCG-GAUGCGCG----GGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 125168 | 0.72 | 0.463368 |
Target: 5'- ---gCGAGGgCcGCGCGCCCGUCGCg -3' miRNA: 3'- cuggGCUUCgGaUGCGCGGGCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 67478 | 0.72 | 0.509526 |
Target: 5'- aACCCGAGGCCgggcCGcCGCCC--CGCCg -3' miRNA: 3'- cUGGGCUUCGGau--GC-GCGGGcaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 116991 | 0.71 | 0.528529 |
Target: 5'- aGACUCGAAGUCUugGgGgCgGUCugCg -3' miRNA: 3'- -CUGGGCUUCGGAugCgCgGgCAGugG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 131974 | 0.71 | 0.538129 |
Target: 5'- aGACgCCGuuGCCUACcgggcgGCGCgCCGcCGCCg -3' miRNA: 3'- -CUG-GGCuuCGGAUG------CGCG-GGCaGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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