miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24374 3' -60.6 NC_005264.1 + 35957 0.7 0.463409
Target:  5'- cGACGCCGCCCCCaCAaUCuaGCgGuAGCu -3'
miRNA:   3'- -CUGUGGCGGGGG-GUaAGggCGgC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 40122 0.7 0.463409
Target:  5'- cGAuCGCCGUCCUCCucgUCUCGCCGccgaGACg -3'
miRNA:   3'- -CU-GUGGCGGGGGGua-AGGGCGGC----UUG- -5'
24374 3' -60.6 NC_005264.1 + 154984 0.7 0.463409
Target:  5'- cGACGCCGCCCCCaCAaUCuaGCgGuAGCu -3'
miRNA:   3'- -CUGUGGCGGGGG-GUaAGggCGgC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 159149 0.7 0.463409
Target:  5'- cGAuCGCCGUCCUCCucgUCUCGCCGccgaGACg -3'
miRNA:   3'- -CU-GUGGCGGGGGGua-AGGGCGGC----UUG- -5'
24374 3' -60.6 NC_005264.1 + 119612 0.7 0.472439
Target:  5'- uAguCCGCCCgCCAgcCCCGCCGuAGCc -3'
miRNA:   3'- cUguGGCGGGgGGUaaGGGCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 585 0.7 0.472439
Target:  5'- uAguCCGCCCgCCAgcCCCGCCGuAGCc -3'
miRNA:   3'- cUguGGCGGGgGGUaaGGGCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 11435 0.7 0.481557
Target:  5'- gGACGCCGgCCgCCGgcaUCCuCGCCaGAACa -3'
miRNA:   3'- -CUGUGGCgGGgGGUa--AGG-GCGG-CUUG- -5'
24374 3' -60.6 NC_005264.1 + 8737 0.7 0.481557
Target:  5'- cGGC-UCGCCCCCCGUUCCuaagCGCCu--- -3'
miRNA:   3'- -CUGuGGCGGGGGGUAAGG----GCGGcuug -5'
24374 3' -60.6 NC_005264.1 + 130462 0.7 0.481557
Target:  5'- gGACGCCGgCCgCCGgcaUCCuCGCCaGAACa -3'
miRNA:   3'- -CUGUGGCgGGgGGUa--AGG-GCGG-CUUG- -5'
24374 3' -60.6 NC_005264.1 + 113212 0.7 0.500044
Target:  5'- aGCACCuugGCCCCCUGguacCCCaCCGAGCg -3'
miRNA:   3'- cUGUGG---CGGGGGGUaa--GGGcGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 38061 0.7 0.500044
Target:  5'- aGGCGCCGCUCUCacaAUgccuaCCCGCCGuGCu -3'
miRNA:   3'- -CUGUGGCGGGGGg--UAa----GGGCGGCuUG- -5'
24374 3' -60.6 NC_005264.1 + 146273 0.69 0.518839
Target:  5'- uGCGCCGCCgCCCCGgcgccgCCCaCCGcGCu -3'
miRNA:   3'- cUGUGGCGG-GGGGUaa----GGGcGGCuUG- -5'
24374 3' -60.6 NC_005264.1 + 158356 0.69 0.528341
Target:  5'- cGCACCGCgCCCCUugacgGUUUCCGCUuAGCc -3'
miRNA:   3'- cUGUGGCG-GGGGG-----UAAGGGCGGcUUG- -5'
24374 3' -60.6 NC_005264.1 + 85068 0.69 0.528341
Target:  5'- uGCcCCGUUCCCCAggUCCGCCGcACc -3'
miRNA:   3'- cUGuGGCGGGGGGUaaGGGCGGCuUG- -5'
24374 3' -60.6 NC_005264.1 + 55626 0.69 0.537906
Target:  5'- cGCACCGCUCCgCGUaCCCauacGCCGGAa -3'
miRNA:   3'- cUGUGGCGGGGgGUAaGGG----CGGCUUg -5'
24374 3' -60.6 NC_005264.1 + 33341 0.69 0.54753
Target:  5'- cGGCGCCGCCaaaCCCug-CgCCGCCGcAAUc -3'
miRNA:   3'- -CUGUGGCGGg--GGGuaaG-GGCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 7589 0.69 0.557209
Target:  5'- cGCGCCGCUgcggagaugcuuCCUCAUccCCCGCCGcAGCa -3'
miRNA:   3'- cUGUGGCGG------------GGGGUAa-GGGCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 47115 0.69 0.557209
Target:  5'- -uCGCCGCgCCCCCua-CCaUGCCGGAUg -3'
miRNA:   3'- cuGUGGCG-GGGGGuaaGG-GCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 97965 0.69 0.557209
Target:  5'- -cCGCCGCCUugcgggcaaucuCCCAg--CCGCCGGACu -3'
miRNA:   3'- cuGUGGCGGG------------GGGUaagGGCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 20903 0.68 0.586511
Target:  5'- -gUACCGCCCaCCCGcUCCU-CUGAACa -3'
miRNA:   3'- cuGUGGCGGG-GGGUaAGGGcGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.