miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24374 3' -60.6 NC_005264.1 + 128341 1.09 0.00118
Target:  5'- uGACACCGCCCCCCAUUCCCGCCGAACg -3'
miRNA:   3'- -CUGUGGCGGGGGGUAAGGGCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 133376 0.81 0.102681
Target:  5'- uGCACCGCCCCCCAaUCCgCGUgGGGCc -3'
miRNA:   3'- cUGUGGCGGGGGGUaAGG-GCGgCUUG- -5'
24374 3' -60.6 NC_005264.1 + 117443 0.76 0.220758
Target:  5'- gGGCGCCGCCCUCCAUcgUuuGCCGcGCc -3'
miRNA:   3'- -CUGUGGCGGGGGGUAa-GggCGGCuUG- -5'
24374 3' -60.6 NC_005264.1 + 39545 0.75 0.272221
Target:  5'- -cCGCCGCCCCgCgGUUCCCGCgCGGc- -3'
miRNA:   3'- cuGUGGCGGGG-GgUAAGGGCG-GCUug -5'
24374 3' -60.6 NC_005264.1 + 158572 0.75 0.272221
Target:  5'- -cCGCCGCCCCgCgGUUCCCGCgCGGc- -3'
miRNA:   3'- cuGUGGCGGGG-GgUAAGGGCG-GCUug -5'
24374 3' -60.6 NC_005264.1 + 10975 0.74 0.278499
Target:  5'- cGCGagaCGCCCCCCAcgugUCgCCGCCGGAg -3'
miRNA:   3'- cUGUg--GCGGGGGGUa---AG-GGCGGCUUg -5'
24374 3' -60.6 NC_005264.1 + 157565 0.74 0.304763
Target:  5'- -cCGCCGCCCCgCcgUCCgGCCGcGACu -3'
miRNA:   3'- cuGUGGCGGGGgGuaAGGgCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 38538 0.74 0.304763
Target:  5'- -cCGCCGCCCCgCcgUCCgGCCGcGACu -3'
miRNA:   3'- cuGUGGCGGGGgGuaAGGgCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 144324 0.73 0.340209
Target:  5'- aGACGgCGCCCCCgaucggcaaggCGUUUUCGCCGAAUc -3'
miRNA:   3'- -CUGUgGCGGGGG-----------GUAAGGGCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 42120 0.73 0.347647
Target:  5'- cGGCACCGUCCUCCGcccgaCCGCCGGc- -3'
miRNA:   3'- -CUGUGGCGGGGGGUaag--GGCGGCUug -5'
24374 3' -60.6 NC_005264.1 + 54706 0.72 0.386556
Target:  5'- --gACgGCCCCCCGaUCCCGgCGGAa -3'
miRNA:   3'- cugUGgCGGGGGGUaAGGGCgGCUUg -5'
24374 3' -60.6 NC_005264.1 + 6140 0.72 0.386556
Target:  5'- aGCACCGCCCgUCCugggUCUCGCgCGGGCu -3'
miRNA:   3'- cUGUGGCGGG-GGGua--AGGGCG-GCUUG- -5'
24374 3' -60.6 NC_005264.1 + 140072 0.72 0.386556
Target:  5'- -uCGCCGCgCCCCuCAUUgCCCGCCGc-- -3'
miRNA:   3'- cuGUGGCG-GGGG-GUAA-GGGCGGCuug -5'
24374 3' -60.6 NC_005264.1 + 137494 0.71 0.411239
Target:  5'- cGCACCGCuaCCCCCAacucgUCcggCCGCCGGAUu -3'
miRNA:   3'- cUGUGGCG--GGGGGUa----AG---GGCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 14554 0.71 0.419681
Target:  5'- cGCGCgGUCUCCagaAUcUCCCGCCGGGCa -3'
miRNA:   3'- cUGUGgCGGGGGg--UA-AGGGCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 142583 0.71 0.428228
Target:  5'- cGCACCGUCCCCUgaaugCCgGCCGcGACg -3'
miRNA:   3'- cUGUGGCGGGGGGuaa--GGgCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 45014 0.71 0.436876
Target:  5'- cGCGCCuCCCCUCGaaCCCGuuGAACa -3'
miRNA:   3'- cUGUGGcGGGGGGUaaGGGCggCUUG- -5'
24374 3' -60.6 NC_005264.1 + 84067 0.71 0.445624
Target:  5'- cACACCGCCCCCUGgcUCauGCgGAGCa -3'
miRNA:   3'- cUGUGGCGGGGGGUa-AGggCGgCUUG- -5'
24374 3' -60.6 NC_005264.1 + 92455 0.71 0.445624
Target:  5'- --gGCCGCCCUCCAgcUCCaCCGAGCc -3'
miRNA:   3'- cugUGGCGGGGGGUaaGGGcGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 87731 0.71 0.454469
Target:  5'- uGACugCGCCCCagcucggcgCCGgcgCCUGCCGcAGCg -3'
miRNA:   3'- -CUGugGCGGGG---------GGUaa-GGGCGGC-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.