miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24374 3' -60.6 NC_005264.1 + 585 0.7 0.472439
Target:  5'- uAguCCGCCCgCCAgcCCCGCCGuAGCc -3'
miRNA:   3'- cUguGGCGGGgGGUaaGGGCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 661 0.66 0.752203
Target:  5'- cGCGCC-CCCCCCuc-CCCGCUccACc -3'
miRNA:   3'- cUGUGGcGGGGGGuaaGGGCGGcuUG- -5'
24374 3' -60.6 NC_005264.1 + 1955 0.66 0.694928
Target:  5'- -cCGuuGCCCCCC---CCC-CCGAGCu -3'
miRNA:   3'- cuGUggCGGGGGGuaaGGGcGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 4697 0.67 0.659599
Target:  5'- uGGCGCCGCgUCCacgacagcagcugguCCAgacgccgcugCCCGCCGAGCc -3'
miRNA:   3'- -CUGUGGCG-GGG---------------GGUaa--------GGGCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 6140 0.72 0.386556
Target:  5'- aGCACCGCCCgUCCugggUCUCGCgCGGGCu -3'
miRNA:   3'- cUGUGGCGGG-GGGua--AGGGCG-GCUUG- -5'
24374 3' -60.6 NC_005264.1 + 6697 0.66 0.694928
Target:  5'- aGACgGCCGCCucgCCCUcgUCCUGCCcaccaccuuGGGCg -3'
miRNA:   3'- -CUG-UGGCGG---GGGGuaAGGGCGG---------CUUG- -5'
24374 3' -60.6 NC_005264.1 + 7406 0.66 0.742856
Target:  5'- cGGCGCCGUCgUCCAUUgguucgUgCGCCGggUg -3'
miRNA:   3'- -CUGUGGCGGgGGGUAA------GgGCGGCuuG- -5'
24374 3' -60.6 NC_005264.1 + 7589 0.69 0.557209
Target:  5'- cGCGCCGCUgcggagaugcuuCCUCAUccCCCGCCGcAGCa -3'
miRNA:   3'- cUGUGGCGG------------GGGGUAa-GGGCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 8737 0.7 0.481557
Target:  5'- cGGC-UCGCCCCCCGUUCCuaagCGCCu--- -3'
miRNA:   3'- -CUGuGGCGGGGGGUAAGG----GCGGcuug -5'
24374 3' -60.6 NC_005264.1 + 10975 0.74 0.278499
Target:  5'- cGCGagaCGCCCCCCAcgugUCgCCGCCGGAg -3'
miRNA:   3'- cUGUg--GCGGGGGGUa---AG-GGCGGCUUg -5'
24374 3' -60.6 NC_005264.1 + 11435 0.7 0.481557
Target:  5'- gGACGCCGgCCgCCGgcaUCCuCGCCaGAACa -3'
miRNA:   3'- -CUGUGGCgGGgGGUa--AGG-GCGG-CUUG- -5'
24374 3' -60.6 NC_005264.1 + 12273 0.66 0.732469
Target:  5'- uGGCcguCCGCCCCCaccccaacggcccucCCCGcCCGAGCc -3'
miRNA:   3'- -CUGu--GGCGGGGGguaa-----------GGGC-GGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 12798 0.67 0.665516
Target:  5'- cGGCACCGUCgCCCAgagagaugaucUCCCGCgaaacaGAGCc -3'
miRNA:   3'- -CUGUGGCGGgGGGUa----------AGGGCGg-----CUUG- -5'
24374 3' -60.6 NC_005264.1 + 14554 0.71 0.419681
Target:  5'- cGCGCgGUCUCCagaAUcUCCCGCCGGGCa -3'
miRNA:   3'- cUGUGgCGGGGGg--UA-AGGGCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 16056 0.67 0.685162
Target:  5'- cACACCGCCgCaCCGagaaCCGCCGcGCg -3'
miRNA:   3'- cUGUGGCGGgG-GGUaag-GGCGGCuUG- -5'
24374 3' -60.6 NC_005264.1 + 16970 0.67 0.634886
Target:  5'- uGCACC-CaCCCCCGUUCgcaaacuCCGCCGGu- -3'
miRNA:   3'- cUGUGGcG-GGGGGUAAG-------GGCGGCUug -5'
24374 3' -60.6 NC_005264.1 + 18530 0.66 0.742856
Target:  5'- gGGCGCCGUcuCCCCCugagggCgCGCCGGc- -3'
miRNA:   3'- -CUGUGGCG--GGGGGuaa---GgGCGGCUug -5'
24374 3' -60.6 NC_005264.1 + 20903 0.68 0.586511
Target:  5'- -gUACCGCCCaCCCGcUCCU-CUGAACa -3'
miRNA:   3'- cuGUGGCGGG-GGGUaAGGGcGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 23396 0.68 0.616089
Target:  5'- --gGCCGCCCUCUugugaCgGCCGAGCa -3'
miRNA:   3'- cugUGGCGGGGGGuaag-GgCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 30193 0.66 0.704644
Target:  5'- -uUACCGCCgCCCCug-CCCGCguccCGAccGCg -3'
miRNA:   3'- cuGUGGCGG-GGGGuaaGGGCG----GCU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.