miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24374 3' -60.6 NC_005264.1 + 47115 0.69 0.557209
Target:  5'- -uCGCCGCgCCCCCua-CCaUGCCGGAUg -3'
miRNA:   3'- cuGUGGCG-GGGGGuaaGG-GCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 119612 0.7 0.472439
Target:  5'- uAguCCGCCCgCCAgcCCCGCCGuAGCc -3'
miRNA:   3'- cUguGGCGGGgGGUaaGGGCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 8737 0.7 0.481557
Target:  5'- cGGC-UCGCCCCCCGUUCCuaagCGCCu--- -3'
miRNA:   3'- -CUGuGGCGGGGGGUAAGG----GCGGcuug -5'
24374 3' -60.6 NC_005264.1 + 130462 0.7 0.481557
Target:  5'- gGACGCCGgCCgCCGgcaUCCuCGCCaGAACa -3'
miRNA:   3'- -CUGUGGCgGGgGGUa--AGG-GCGG-CUUG- -5'
24374 3' -60.6 NC_005264.1 + 38061 0.7 0.500044
Target:  5'- aGGCGCCGCUCUCacaAUgccuaCCCGCCGuGCu -3'
miRNA:   3'- -CUGUGGCGGGGGg--UAa----GGGCGGCuUG- -5'
24374 3' -60.6 NC_005264.1 + 85068 0.69 0.528341
Target:  5'- uGCcCCGUUCCCCAggUCCGCCGcACc -3'
miRNA:   3'- cUGuGGCGGGGGGUaaGGGCGGCuUG- -5'
24374 3' -60.6 NC_005264.1 + 55626 0.69 0.537906
Target:  5'- cGCACCGCUCCgCGUaCCCauacGCCGGAa -3'
miRNA:   3'- cUGUGGCGGGGgGUAaGGG----CGGCUUg -5'
24374 3' -60.6 NC_005264.1 + 33341 0.69 0.54753
Target:  5'- cGGCGCCGCCaaaCCCug-CgCCGCCGcAAUc -3'
miRNA:   3'- -CUGUGGCGGg--GGGuaaG-GGCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 7589 0.69 0.557209
Target:  5'- cGCGCCGCUgcggagaugcuuCCUCAUccCCCGCCGcAGCa -3'
miRNA:   3'- cUGUGGCGG------------GGGGUAa-GGGCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 159149 0.7 0.463409
Target:  5'- cGAuCGCCGUCCUCCucgUCUCGCCGccgaGACg -3'
miRNA:   3'- -CU-GUGGCGGGGGGua-AGGGCGGC----UUG- -5'
24374 3' -60.6 NC_005264.1 + 154984 0.7 0.463409
Target:  5'- cGACGCCGCCCCCaCAaUCuaGCgGuAGCu -3'
miRNA:   3'- -CUGUGGCGGGGG-GUaAGggCGgC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 45014 0.71 0.436876
Target:  5'- cGCGCCuCCCCUCGaaCCCGuuGAACa -3'
miRNA:   3'- cUGUGGcGGGGGGUaaGGGCggCUUG- -5'
24374 3' -60.6 NC_005264.1 + 117443 0.76 0.220758
Target:  5'- gGGCGCCGCCCUCCAUcgUuuGCCGcGCc -3'
miRNA:   3'- -CUGUGGCGGGGGGUAa-GggCGGCuUG- -5'
24374 3' -60.6 NC_005264.1 + 158572 0.75 0.272221
Target:  5'- -cCGCCGCCCCgCgGUUCCCGCgCGGc- -3'
miRNA:   3'- cuGUGGCGGGG-GgUAAGGGCG-GCUug -5'
24374 3' -60.6 NC_005264.1 + 10975 0.74 0.278499
Target:  5'- cGCGagaCGCCCCCCAcgugUCgCCGCCGGAg -3'
miRNA:   3'- cUGUg--GCGGGGGGUa---AG-GGCGGCUUg -5'
24374 3' -60.6 NC_005264.1 + 157565 0.74 0.304763
Target:  5'- -cCGCCGCCCCgCcgUCCgGCCGcGACu -3'
miRNA:   3'- cuGUGGCGGGGgGuaAGGgCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 42120 0.73 0.347647
Target:  5'- cGGCACCGUCCUCCGcccgaCCGCCGGc- -3'
miRNA:   3'- -CUGUGGCGGGGGGUaag--GGCGGCUug -5'
24374 3' -60.6 NC_005264.1 + 6140 0.72 0.386556
Target:  5'- aGCACCGCCCgUCCugggUCUCGCgCGGGCu -3'
miRNA:   3'- cUGUGGCGGG-GGGua--AGGGCG-GCUUG- -5'
24374 3' -60.6 NC_005264.1 + 54706 0.72 0.386556
Target:  5'- --gACgGCCCCCCGaUCCCGgCGGAa -3'
miRNA:   3'- cugUGgCGGGGGGUaAGGGCgGCUUg -5'
24374 3' -60.6 NC_005264.1 + 142583 0.71 0.428228
Target:  5'- cGCACCGUCCCCUgaaugCCgGCCGcGACg -3'
miRNA:   3'- cUGUGGCGGGGGGuaa--GGgCGGC-UUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.