miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 3' -55.6 NC_005264.1 + 36079 0.69 0.801377
Target:  5'- uGCCGUCGcugucccucucuUCGGCGCGGcuggcaGAUGGGUa- -3'
miRNA:   3'- gCGGUAGC------------AGCCGCGCU------UUGUCCAga -5'
24375 3' -55.6 NC_005264.1 + 75809 0.69 0.801377
Target:  5'- uCGCCGUcCGUaGGCGCGc-GguGGUCUa -3'
miRNA:   3'- -GCGGUA-GCAgCCGCGCuuUguCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 40643 0.69 0.810162
Target:  5'- gCGCCGUCG-CGaCGCGGA--GGGUCg -3'
miRNA:   3'- -GCGGUAGCaGCcGCGCUUugUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 130542 0.69 0.818788
Target:  5'- gCGCgaagCGUCG-CGGCGCGugugcuacgcGCAGGUCUc -3'
miRNA:   3'- -GCG----GUAGCaGCCGCGCuu--------UGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 159670 0.69 0.818788
Target:  5'- gCGCCGUCG-C-GCGCGGA--GGGUCg -3'
miRNA:   3'- -GCGGUAGCaGcCGCGCUUugUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 127183 0.69 0.818788
Target:  5'- aCGaCCAUCGU--GCGCGAAgcGCAGGUa- -3'
miRNA:   3'- -GC-GGUAGCAgcCGCGCUU--UGUCCAga -5'
24375 3' -55.6 NC_005264.1 + 45565 0.69 0.827247
Target:  5'- uCGCCcgUGUCGGCGCGc-ACGaGUCc -3'
miRNA:   3'- -GCGGuaGCAGCCGCGCuuUGUcCAGa -5'
24375 3' -55.6 NC_005264.1 + 75037 0.69 0.835531
Target:  5'- gGCUAUCGaUUGuCGCGAAGCccGGGUCg -3'
miRNA:   3'- gCGGUAGC-AGCcGCGCUUUG--UCCAGa -5'
24375 3' -55.6 NC_005264.1 + 3105 0.69 0.835531
Target:  5'- uGCCAUCG-C-GCGC--AGCAGGUCUc -3'
miRNA:   3'- gCGGUAGCaGcCGCGcuUUGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 96351 0.69 0.835531
Target:  5'- gCGCCAUCGcCGGCaCGGGACucaaaAGGaUCa -3'
miRNA:   3'- -GCGGUAGCaGCCGcGCUUUG-----UCC-AGa -5'
24375 3' -55.6 NC_005264.1 + 30845 0.68 0.843634
Target:  5'- gCGUCGUCGUCGGCgGCGgcGCGccgcccGGUa- -3'
miRNA:   3'- -GCGGUAGCAGCCG-CGCuuUGU------CCAga -5'
24375 3' -55.6 NC_005264.1 + 122516 0.68 0.843634
Target:  5'- cCGCCGcaCG-CGGCGgGggGCAGGg-- -3'
miRNA:   3'- -GCGGUa-GCaGCCGCgCuuUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 3489 0.68 0.843634
Target:  5'- cCGCCGcaCG-CGGCGgGggGCAGGg-- -3'
miRNA:   3'- -GCGGUa-GCaGCCGCgCuuUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 149871 0.68 0.843634
Target:  5'- gCGUCGUCGUCGGCgGCGgcGCGccgcccGGUa- -3'
miRNA:   3'- -GCGGUAGCAGCCG-CGCuuUGU------CCAga -5'
24375 3' -55.6 NC_005264.1 + 74911 0.68 0.84998
Target:  5'- aGCCAUgGUCGGCGCGuacucgugcaagauACgauaaaucucuaccGGGUCg -3'
miRNA:   3'- gCGGUAgCAGCCGCGCuu------------UG--------------UCCAGa -5'
24375 3' -55.6 NC_005264.1 + 117500 0.68 0.851547
Target:  5'- uCGCC-UCGUCucgGGCGCGgcGCGucugcGGUCg -3'
miRNA:   3'- -GCGGuAGCAG---CCGCGCuuUGU-----CCAGa -5'
24375 3' -55.6 NC_005264.1 + 58027 0.68 0.858501
Target:  5'- gGCCGUCGUgCGGCgcccgcucgucucGCGAAAgAGGa-- -3'
miRNA:   3'- gCGGUAGCA-GCCG-------------CGCUUUgUCCaga -5'
24375 3' -55.6 NC_005264.1 + 132241 0.68 0.859264
Target:  5'- cCGCCGUCGcCGG-GCugcuucucccgaGAAGCAGGUg- -3'
miRNA:   3'- -GCGGUAGCaGCCgCG------------CUUUGUCCAga -5'
24375 3' -55.6 NC_005264.1 + 13214 0.68 0.859264
Target:  5'- cCGCCGUCGcCGG-GCugcuucucccgaGAAGCAGGUg- -3'
miRNA:   3'- -GCGGUAGCaGCCgCG------------CUUUGUCCAga -5'
24375 3' -55.6 NC_005264.1 + 125521 0.68 0.866779
Target:  5'- gGCCAUCGagGGC-CGGuAGCcGGUCUu -3'
miRNA:   3'- gCGGUAGCagCCGcGCU-UUGuCCAGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.