miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 70193 0.7 0.908443
Target:  5'- ---uGCGgcGCGAGGGCCAcGCGGCa- -3'
miRNA:   3'- aauuUGUauCGCUCUCGGU-CGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 88957 0.7 0.908443
Target:  5'- ---uGCu--GCGAGAGUCGGCGACg- -3'
miRNA:   3'- aauuUGuauCGCUCUCGGUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 113494 0.7 0.908443
Target:  5'- --------cGCGAGuGCCAaccGCGACCCu -3'
miRNA:   3'- aauuuguauCGCUCuCGGU---CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 153270 0.7 0.91404
Target:  5'- aUAGACgaacccggcuucuGUAGCGAGGcGCgGGCGACgCg -3'
miRNA:   3'- aAUUUG-------------UAUCGCUCU-CGgUCGCUGgG- -5'
24375 5' -51.5 NC_005264.1 + 34243 0.7 0.91404
Target:  5'- aUAGACgaacccggcuucuGUAGCGAGGcGCgGGCGACgCg -3'
miRNA:   3'- aAUUUG-------------UAUCGCUCU-CGgUCGCUGgG- -5'
24375 5' -51.5 NC_005264.1 + 27900 0.7 0.914649
Target:  5'- --cAGCGUcucGGCGAGGGUgAGCGACg- -3'
miRNA:   3'- aauUUGUA---UCGCUCUCGgUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 86528 0.7 0.920597
Target:  5'- ---uAUAcAGCGAauGAGCCAGCaGCCCc -3'
miRNA:   3'- aauuUGUaUCGCU--CUCGGUCGcUGGG- -5'
24375 5' -51.5 NC_005264.1 + 122016 0.69 0.926287
Target:  5'- ----cCAUAGCGGgaucuuGAGUCucGGCGACCCc -3'
miRNA:   3'- aauuuGUAUCGCU------CUCGG--UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 120466 0.69 0.926287
Target:  5'- -aGGGCcuccGCGGGAGCCAGCaccGGCCa -3'
miRNA:   3'- aaUUUGuau-CGCUCUCGGUCG---CUGGg -5'
24375 5' -51.5 NC_005264.1 + 1439 0.69 0.926287
Target:  5'- -aGGGCcuccGCGGGAGCCAGCaccGGCCa -3'
miRNA:   3'- aaUUUGuau-CGCUCUCGGUCG---CUGGg -5'
24375 5' -51.5 NC_005264.1 + 38383 0.69 0.931719
Target:  5'- -------cGGCGAGAG-CGGCGACgCCg -3'
miRNA:   3'- aauuuguaUCGCUCUCgGUCGCUG-GG- -5'
24375 5' -51.5 NC_005264.1 + 106310 0.69 0.931719
Target:  5'- --cGACAgcuGCGGcGGGCagGGCGACCCc -3'
miRNA:   3'- aauUUGUau-CGCU-CUCGg-UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 110496 0.69 0.931719
Target:  5'- -cGGACGUGuuGUGGGGcagcccGcCCAGCGACCCu -3'
miRNA:   3'- aaUUUGUAU--CGCUCU------C-GGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 157410 0.69 0.931719
Target:  5'- -------cGGCGAGAG-CGGCGACgCCg -3'
miRNA:   3'- aauuuguaUCGCUCUCgGUCGCUG-GG- -5'
24375 5' -51.5 NC_005264.1 + 5082 0.69 0.931719
Target:  5'- -gGAACGUggguuGGCGAggaGAGCCAgucuGCGGCCg -3'
miRNA:   3'- aaUUUGUA-----UCGCU---CUCGGU----CGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 132381 0.69 0.931719
Target:  5'- aUGAACGUcggGGCc-GAGCCGG-GGCCCg -3'
miRNA:   3'- aAUUUGUA---UCGcuCUCGGUCgCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 13354 0.69 0.931719
Target:  5'- aUGAACGUcggGGCc-GAGCCGG-GGCCCg -3'
miRNA:   3'- aAUUUGUA---UCGcuCUCGGUCgCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 8532 0.69 0.936892
Target:  5'- -gAAACAUcGUaaGAGGGCCAGCaaaaGCCCc -3'
miRNA:   3'- aaUUUGUAuCG--CUCUCGGUCGc---UGGG- -5'
24375 5' -51.5 NC_005264.1 + 2992 0.69 0.941809
Target:  5'- ---cAUcgAGCGccgacuGGGCCGGCGGCUCg -3'
miRNA:   3'- aauuUGuaUCGCu-----CUCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 94946 0.69 0.941809
Target:  5'- cUAcGCGUcGGUGGuGGGCCucGCGGCCCa -3'
miRNA:   3'- aAUuUGUA-UCGCU-CUCGGu-CGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.