Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24376 | 5' | -53.6 | NC_005264.1 | + | 126819 | 1.11 | 0.003553 |
Target: 5'- cUCGCUCAGAGUAUUGGCGGGCAACGCc -3' miRNA: 3'- -AGCGAGUCUCAUAACCGCCCGUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 123039 | 0.8 | 0.356403 |
Target: 5'- cUCGCccacCAGGGgcUUGGCGGGcCGAUGCa -3' miRNA: 3'- -AGCGa---GUCUCauAACCGCCC-GUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 4012 | 0.8 | 0.356403 |
Target: 5'- cUCGCccacCAGGGgcUUGGCGGGcCGAUGCa -3' miRNA: 3'- -AGCGa---GUCUCauAACCGCCC-GUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 133879 | 0.79 | 0.38937 |
Target: 5'- gCGCUCAGAGUcUUGGCGuucacccacGGCucguACGCg -3' miRNA: 3'- aGCGAGUCUCAuAACCGC---------CCGu---UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 160888 | 0.76 | 0.538964 |
Target: 5'- -aGCUCGGGGg---GGgGGGCAACGg -3' miRNA: 3'- agCGAGUCUCauaaCCgCCCGUUGCg -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 41862 | 0.76 | 0.538964 |
Target: 5'- -aGCUCGGGGg---GGgGGGCAACGg -3' miRNA: 3'- agCGAGUCUCauaaCCgCCCGUUGCg -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 14118 | 0.75 | 0.559203 |
Target: 5'- aUGCUCGGcg-GUUGGCGaGGUAGCGUg -3' miRNA: 3'- aGCGAGUCucaUAACCGC-CCGUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 143215 | 0.75 | 0.610589 |
Target: 5'- aCGCUCAGAGggaauUGUUGGCGaGG--GCGCc -3' miRNA: 3'- aGCGAGUCUC-----AUAACCGC-CCguUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 108703 | 0.74 | 0.641677 |
Target: 5'- -aGUUUAGcGUcggUGGUGGGCAGCGCc -3' miRNA: 3'- agCGAGUCuCAua-ACCGCCCGUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 90437 | 0.74 | 0.662377 |
Target: 5'- cUCGCcgUAGAGaucgcucaGGUGGGCGGCGCg -3' miRNA: 3'- -AGCGa-GUCUCauaa----CCGCCCGUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 126935 | 0.73 | 0.672694 |
Target: 5'- cUCGC-CGGAGUAcUGGgGGGacgUAACGCu -3' miRNA: 3'- -AGCGaGUCUCAUaACCgCCC---GUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 7909 | 0.73 | 0.672694 |
Target: 5'- cUCGC-CGGAGUAcUGGgGGGacgUAACGCu -3' miRNA: 3'- -AGCGaGUCUCAUaACCgCCC---GUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 106854 | 0.73 | 0.682977 |
Target: 5'- cUCGUUCaucugcGGGGUcaugGGCGGGCAcgaACGCa -3' miRNA: 3'- -AGCGAG------UCUCAuaa-CCGCCCGU---UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 120489 | 0.72 | 0.743444 |
Target: 5'- gUGCgCGGAGUAggUGGCggGGGCGAgGCc -3' miRNA: 3'- aGCGaGUCUCAUa-ACCG--CCCGUUgCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 66476 | 0.71 | 0.818122 |
Target: 5'- cCGCggcCAGAcucaaugcUUGGCGGGCuGCGCg -3' miRNA: 3'- aGCGa--GUCUcau-----AACCGCCCGuUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 139731 | 0.7 | 0.834398 |
Target: 5'- cUCGCUCGuuGGGa---GGCGGGCGgcagacaACGCg -3' miRNA: 3'- -AGCGAGU--CUCauaaCCGCCCGU-------UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 141935 | 0.7 | 0.835236 |
Target: 5'- aUGUUCAGAGgagcgGGUGGGCGguACGa -3' miRNA: 3'- aGCGAGUCUCauaa-CCGCCCGU--UGCg -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 122637 | 0.7 | 0.841873 |
Target: 5'- cCGCcgCGGGGggccgcgagGGCGGGC-GCGCu -3' miRNA: 3'- aGCGa-GUCUCauaa-----CCGCCCGuUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 3610 | 0.7 | 0.841873 |
Target: 5'- cCGCcgCGGGGggccgcgagGGCGGGC-GCGCu -3' miRNA: 3'- aGCGa-GUCUCauaa-----CCGCCCGuUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 34529 | 0.7 | 0.851593 |
Target: 5'- aUGCgguuGGGcGUUGGCGGGguACGUg -3' miRNA: 3'- aGCGagu-CUCaUAACCGCCCguUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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