miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24376 5' -53.6 NC_005264.1 + 34529 0.7 0.851593
Target:  5'- aUGCgguuGGGcGUUGGCGGGguACGUg -3'
miRNA:   3'- aGCGagu-CUCaUAACCGCCCguUGCG- -5'
24376 5' -53.6 NC_005264.1 + 153556 0.7 0.851593
Target:  5'- aUGCgguuGGGcGUUGGCGGGguACGUg -3'
miRNA:   3'- aGCGagu-CUCaUAACCGCCCguUGCG- -5'
24376 5' -53.6 NC_005264.1 + 110137 0.7 0.859468
Target:  5'- gCGCUUuuGGg---GGCGGGCGGCGa -3'
miRNA:   3'- aGCGAGucUCauaaCCGCCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 72268 0.69 0.867133
Target:  5'- gCGCUgCAGAGgcguacUGGCcGGCAACGa -3'
miRNA:   3'- aGCGA-GUCUCaua---ACCGcCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 31579 0.69 0.867888
Target:  5'- gCGC-CAGAGgugGggcgagucugcucucUGGCGaGGCGGCGCg -3'
miRNA:   3'- aGCGaGUCUCa--Ua--------------ACCGC-CCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 150606 0.69 0.867888
Target:  5'- gCGC-CAGAGgugGggcgagucugcucucUGGCGaGGCGGCGCg -3'
miRNA:   3'- aGCGaGUCUCa--Ua--------------ACCGC-CCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 124706 0.69 0.874581
Target:  5'- gCGUUCccacGAGUAcagagcGcGCGGGCAACGCc -3'
miRNA:   3'- aGCGAGu---CUCAUaa----C-CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 116428 0.69 0.874581
Target:  5'- gUCGCUgGGGGcGUcUGGCcgcggGGGCGACGa -3'
miRNA:   3'- -AGCGAgUCUCaUA-ACCG-----CCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 29467 0.69 0.874581
Target:  5'- aCGCggauuGGGg---GGCGGuGCAGCGCa -3'
miRNA:   3'- aGCGagu--CUCauaaCCGCC-CGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 94599 0.69 0.874581
Target:  5'- cCGCggcgCGGGcauGgcUUGGCGGuGCGGCGUg -3'
miRNA:   3'- aGCGa---GUCU---CauAACCGCC-CGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 5679 0.69 0.874581
Target:  5'- gCGUUCccacGAGUAcagagcGcGCGGGCAACGCc -3'
miRNA:   3'- aGCGAGu---CUCAUaa----C-CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 6988 0.69 0.881806
Target:  5'- -gGCgCGGGGUugucccuGCGGGCGGCGCc -3'
miRNA:   3'- agCGaGUCUCAuaac---CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 16543 0.69 0.888115
Target:  5'- gCGCUUGcGcGUAUUucagcgcGGUGGGCGGCGCc -3'
miRNA:   3'- aGCGAGU-CuCAUAA-------CCGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 150982 0.69 0.895571
Target:  5'- -aGCUCGcGAGUGgcGGCgacGGGCcGCGUg -3'
miRNA:   3'- agCGAGU-CUCAUaaCCG---CCCGuUGCG- -5'
24376 5' -53.6 NC_005264.1 + 31955 0.69 0.895571
Target:  5'- -aGCUCGcGAGUGgcGGCgacGGGCcGCGUg -3'
miRNA:   3'- agCGAGU-CUCAUaaCCG---CCCGuUGCG- -5'
24376 5' -53.6 NC_005264.1 + 59736 0.69 0.902101
Target:  5'- cUCGUUagaAGAGUcauggGGCGGcggcuGCGACGCg -3'
miRNA:   3'- -AGCGAg--UCUCAuaa--CCGCC-----CGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 64666 0.69 0.902101
Target:  5'- gUCGUUUAGGGgGUUugggccugccGGCGGGCAGgcCGUg -3'
miRNA:   3'- -AGCGAGUCUCaUAA----------CCGCCCGUU--GCG- -5'
24376 5' -53.6 NC_005264.1 + 6813 0.68 0.908392
Target:  5'- aCGgUCAGGGUGUUGcCGGagGCGGCGg -3'
miRNA:   3'- aGCgAGUCUCAUAACcGCC--CGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 157334 0.68 0.908392
Target:  5'- aCGCcuucgCGGAGgccgacgaggGUUGGCGGGCccuggccguGAUGCu -3'
miRNA:   3'- aGCGa----GUCUCa---------UAACCGCCCG---------UUGCG- -5'
24376 5' -53.6 NC_005264.1 + 38307 0.68 0.908392
Target:  5'- aCGCcuucgCGGAGgccgacgaggGUUGGCGGGCccuggccguGAUGCu -3'
miRNA:   3'- aGCGa----GUCUCa---------UAACCGCCCG---------UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.