Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24377 | 5' | -58.4 | NC_005264.1 | + | 48859 | 0.66 | 0.864133 |
Target: 5'- cGCGGUCGUgUCGUCGCuuCUgacgCgCCGGg -3' miRNA: 3'- aCGCUAGCAgGGCAGCGc-GAa---G-GGCU- -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 103081 | 0.66 | 0.856721 |
Target: 5'- cGCGAagCGUCCgCGUCGCaGCcgccgCCCc- -3' miRNA: 3'- aCGCUa-GCAGG-GCAGCG-CGaa---GGGcu -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 134766 | 0.66 | 0.849117 |
Target: 5'- cGCGAguaagcccguguUCGcUUCCG-CGCGCUUuuaCCCGGc -3' miRNA: 3'- aCGCU------------AGC-AGGGCaGCGCGAA---GGGCU- -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 3242 | 0.66 | 0.848347 |
Target: 5'- gUGCGcauguccGUCG-CUCGUCuCGCUUCUCGGu -3' miRNA: 3'- -ACGC-------UAGCaGGGCAGcGCGAAGGGCU- -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 53205 | 0.66 | 0.825222 |
Target: 5'- cGCGAgUUGcaaCCGUCGCGCccCCCGc -3' miRNA: 3'- aCGCU-AGCag-GGCAGCGCGaaGGGCu -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 100584 | 0.67 | 0.816078 |
Target: 5'- aGCGccGUCGUuguacagCCUGUgGCgGCUUCCCGu -3' miRNA: 3'- aCGC--UAGCA-------GGGCAgCG-CGAAGGGCu -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 143752 | 0.67 | 0.794606 |
Target: 5'- cGCGGUgcaGUCCUggcucccuaugcgcgGgaagCGCGCUUCCCGc -3' miRNA: 3'- aCGCUAg--CAGGG---------------Ca---GCGCGAAGGGCu -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 34451 | 0.67 | 0.791088 |
Target: 5'- gGCGAucaagcUCGUCCCGcacuauuugcgCGCGCUUCagGAg -3' miRNA: 3'- aCGCU------AGCAGGGCa----------GCGCGAAGggCU- -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 63849 | 0.67 | 0.788435 |
Target: 5'- cGCGGUCGUUUCGUCaggcCGCUcacaacggccgucuUCUCGAg -3' miRNA: 3'- aCGCUAGCAGGGCAGc---GCGA--------------AGGGCU- -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 115290 | 0.67 | 0.782198 |
Target: 5'- cGCGAcaacgaCGUCCCG-CGCagccCUUCCUGAc -3' miRNA: 3'- aCGCUa-----GCAGGGCaGCGc---GAAGGGCU- -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 27780 | 0.67 | 0.782198 |
Target: 5'- gGCGAgaaauucgUCGUCCCGUUGUaGUUUUgCGGa -3' miRNA: 3'- aCGCU--------AGCAGGGCAGCG-CGAAGgGCU- -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 44933 | 0.67 | 0.773182 |
Target: 5'- aGCGAaccgCGggCCCGUUGCGCgcgugacUCCCu- -3' miRNA: 3'- aCGCUa---GCa-GGGCAGCGCGa------AGGGcu -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 30221 | 0.68 | 0.754802 |
Target: 5'- cGCGAUCGccggUCCCGUCuucguuccGCcCUUCCCc- -3' miRNA: 3'- aCGCUAGC----AGGGCAG--------CGcGAAGGGcu -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 149248 | 0.68 | 0.754802 |
Target: 5'- cGCGAUCGccggUCCCGUCuucguuccGCcCUUCCCc- -3' miRNA: 3'- aCGCUAGC----AGGGCAG--------CGcGAAGGGcu -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 147372 | 0.68 | 0.745456 |
Target: 5'- cGCGAUCG-CCgcuuucgcguCGUCGCGCUUgUCCa- -3' miRNA: 3'- aCGCUAGCaGG----------GCAGCGCGAA-GGGcu -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 53722 | 0.68 | 0.736016 |
Target: 5'- gGCGAacgagucCGUCUCGUCGUGCccgUCuCCGGc -3' miRNA: 3'- aCGCUa------GCAGGGCAGCGCGa--AG-GGCU- -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 6930 | 0.68 | 0.736016 |
Target: 5'- cGCGAUUGUCUugagcuaauaCGUCGCGCcgCaCCGu -3' miRNA: 3'- aCGCUAGCAGG----------GCAGCGCGaaG-GGCu -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 161699 | 0.68 | 0.736016 |
Target: 5'- gGCcgGAUCGUCCCGU-GCGCccgUCCGu -3' miRNA: 3'- aCG--CUAGCAGGGCAgCGCGaa-GGGCu -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 42673 | 0.68 | 0.736016 |
Target: 5'- gGCcgGAUCGUCCCGU-GCGCccgUCCGu -3' miRNA: 3'- aCG--CUAGCAGGGCAgCGCGaa-GGGCu -5' |
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24377 | 5' | -58.4 | NC_005264.1 | + | 98354 | 0.69 | 0.70722 |
Target: 5'- gGCGAcUC-UCUCGgCGCGCUUgCCGAa -3' miRNA: 3'- aCGCU-AGcAGGGCaGCGCGAAgGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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