miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24380 5' -45.4 NC_005264.1 + 124917 1.09 0.035249
Target:  5'- uCAUAAAGACCACGGAGCGAAUAUACGc -3'
miRNA:   3'- -GUAUUUCUGGUGCCUCGCUUAUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 143526 0.8 0.838082
Target:  5'- --cGAGGACCACGacGAGuCGGAUGUGCGa -3'
miRNA:   3'- guaUUUCUGGUGC--CUC-GCUUAUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 101353 0.8 0.855181
Target:  5'- ---cGAGACCGCGGGGCGcGUcgGCGc -3'
miRNA:   3'- guauUUCUGGUGCCUCGCuUAuaUGC- -5'
24380 5' -45.4 NC_005264.1 + 136332 0.78 0.907411
Target:  5'- --gAAAGACCGCGGGGagaGAuauUAUACGg -3'
miRNA:   3'- guaUUUCUGGUGCCUCg--CUu--AUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 4896 0.75 0.969895
Target:  5'- --cGGGGACCGCGGAGgCGAGcgacgaagAUGCGa -3'
miRNA:   3'- guaUUUCUGGUGCCUC-GCUUa-------UAUGC- -5'
24380 5' -45.4 NC_005264.1 + 123922 0.75 0.969895
Target:  5'- --cGGGGACCGCGGAGgCGAGcgacgaagAUGCGa -3'
miRNA:   3'- guaUUUCUGGUGCCUC-GCUUa-------UAUGC- -5'
24380 5' -45.4 NC_005264.1 + 103705 0.74 0.98662
Target:  5'- -uUGAGGGCCAgUGGAGCGGcgGcGCGg -3'
miRNA:   3'- guAUUUCUGGU-GCCUCGCUuaUaUGC- -5'
24380 5' -45.4 NC_005264.1 + 76147 0.72 0.996998
Target:  5'- --cAAAGACCGCGcGcGGCGAGUA-ACGa -3'
miRNA:   3'- guaUUUCUGGUGC-C-UCGCUUAUaUGC- -5'
24380 5' -45.4 NC_005264.1 + 17278 0.72 0.996998
Target:  5'- --cGGAGGCgACGGGGCGGAgg-GCu -3'
miRNA:   3'- guaUUUCUGgUGCCUCGCUUauaUGc -5'
24380 5' -45.4 NC_005264.1 + 103530 0.71 0.997481
Target:  5'- --gAGAGACUc--GAGCGGAUAUGCGg -3'
miRNA:   3'- guaUUUCUGGugcCUCGCUUAUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 68013 0.71 0.997481
Target:  5'- aGUAAAG-CCGCGGAGCGccaaagaGCGg -3'
miRNA:   3'- gUAUUUCuGGUGCCUCGCuuaua--UGC- -5'
24380 5' -45.4 NC_005264.1 + 139861 0.71 0.998559
Target:  5'- cCAUGu-GG-CACGGGGCGAAcGUACGg -3'
miRNA:   3'- -GUAUuuCUgGUGCCUCGCUUaUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 19058 0.7 0.998818
Target:  5'- uCGUGAcuaAGcccGCCGCGGGGCaaGAUGUGCGg -3'
miRNA:   3'- -GUAUU---UC---UGGUGCCUCGc-UUAUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 91892 0.7 0.99937
Target:  5'- gGUGGuuGGCCGCGGcAGCGAugg-GCGg -3'
miRNA:   3'- gUAUUu-CUGGUGCC-UCGCUuauaUGC- -5'
24380 5' -45.4 NC_005264.1 + 116546 0.7 0.99937
Target:  5'- -uUGGGGGCUACGGAgGCGGcgucgAUGCGc -3'
miRNA:   3'- guAUUUCUGGUGCCU-CGCUua---UAUGC- -5'
24380 5' -45.4 NC_005264.1 + 106970 0.7 0.999484
Target:  5'- aCGUGGAGGCCAUcgccaGGAGCcgcauagacgccuGGAUAUAUGc -3'
miRNA:   3'- -GUAUUUCUGGUG-----CCUCG-------------CUUAUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 19959 0.69 0.999599
Target:  5'- gAUGGAGAaaggCGCGGcGCGAGUcgACGc -3'
miRNA:   3'- gUAUUUCUg---GUGCCuCGCUUAuaUGC- -5'
24380 5' -45.4 NC_005264.1 + 28393 0.69 0.999683
Target:  5'- cCAUGccGAuCCugGGcGUGggUAUGCGu -3'
miRNA:   3'- -GUAUuuCU-GGugCCuCGCuuAUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 100090 0.69 0.999752
Target:  5'- gCAUGgcGGCCGCGGggcucAGCGAcgAcGCGg -3'
miRNA:   3'- -GUAUuuCUGGUGCC-----UCGCUuaUaUGC- -5'
24380 5' -45.4 NC_005264.1 + 150598 0.69 0.999752
Target:  5'- aCGUGGAGgcGCCAgaggUGGGGCGAGUcUGCu -3'
miRNA:   3'- -GUAUUUC--UGGU----GCCUCGCUUAuAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.