miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24380 5' -45.4 NC_005264.1 + 3617 0.66 0.999993
Target:  5'- --gGGGGGCCGCGaGGGCGGGc--GCGc -3'
miRNA:   3'- guaUUUCUGGUGC-CUCGCUUauaUGC- -5'
24380 5' -45.4 NC_005264.1 + 4896 0.75 0.969895
Target:  5'- --cGGGGACCGCGGAGgCGAGcgacgaagAUGCGa -3'
miRNA:   3'- guaUUUCUGGUGCCUC-GCUUa-------UAUGC- -5'
24380 5' -45.4 NC_005264.1 + 6222 0.66 0.99999
Target:  5'- ----cGGGCCuACGGAGaCGggUucUGCGg -3'
miRNA:   3'- guauuUCUGG-UGCCUC-GCuuAu-AUGC- -5'
24380 5' -45.4 NC_005264.1 + 12454 0.66 0.999995
Target:  5'- -cUAAAGGCC-CGGcaggcgucAGCGAGUucuUGCGu -3'
miRNA:   3'- guAUUUCUGGuGCC--------UCGCUUAu--AUGC- -5'
24380 5' -45.4 NC_005264.1 + 17278 0.72 0.996998
Target:  5'- --cGGAGGCgACGGGGCGGAgg-GCu -3'
miRNA:   3'- guaUUUCUGgUGCCUCGCUUauaUGc -5'
24380 5' -45.4 NC_005264.1 + 18613 0.66 0.99999
Target:  5'- --aGAAGACCgcaGCGGAcGUGuuUGUGCa -3'
miRNA:   3'- guaUUUCUGG---UGCCU-CGCuuAUAUGc -5'
24380 5' -45.4 NC_005264.1 + 19058 0.7 0.998818
Target:  5'- uCGUGAcuaAGcccGCCGCGGGGCaaGAUGUGCGg -3'
miRNA:   3'- -GUAUU---UC---UGGUGCCUCGc-UUAUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 19433 0.66 0.999995
Target:  5'- gGUGu-GGCCGCGGGGCGcggGUGgGu -3'
miRNA:   3'- gUAUuuCUGGUGCCUCGCuuaUAUgC- -5'
24380 5' -45.4 NC_005264.1 + 19959 0.69 0.999599
Target:  5'- gAUGGAGAaaggCGCGGcGCGAGUcgACGc -3'
miRNA:   3'- gUAUUUCUg---GUGCCuCGCUUAuaUGC- -5'
24380 5' -45.4 NC_005264.1 + 21241 0.66 0.999997
Target:  5'- gCGUu--GACgACGGcuCGAGUGUGCGc -3'
miRNA:   3'- -GUAuuuCUGgUGCCucGCUUAUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 22938 0.67 0.999981
Target:  5'- --gGAAGACCAUGG-GUGAc--UGCGa -3'
miRNA:   3'- guaUUUCUGGUGCCuCGCUuauAUGC- -5'
24380 5' -45.4 NC_005264.1 + 28393 0.69 0.999683
Target:  5'- cCAUGccGAuCCugGGcGUGggUAUGCGu -3'
miRNA:   3'- -GUAUuuCU-GGugCCuCGCuuAUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 31571 0.69 0.999752
Target:  5'- aCGUGGAGgcGCCAgaggUGGGGCGAGUcUGCu -3'
miRNA:   3'- -GUAUUUC--UGGU----GCCUCGCUUAuAUGc -5'
24380 5' -45.4 NC_005264.1 + 33399 0.68 0.999934
Target:  5'- gAUGgcGACCGCGGugauguugGGCGAGUAcGCc -3'
miRNA:   3'- gUAUuuCUGGUGCC--------UCGCUUAUaUGc -5'
24380 5' -45.4 NC_005264.1 + 33909 0.68 0.999951
Target:  5'- --aGAAGACaugGCGGAGCGAGcccacACGa -3'
miRNA:   3'- guaUUUCUGg--UGCCUCGCUUaua--UGC- -5'
24380 5' -45.4 NC_005264.1 + 36438 0.66 0.999997
Target:  5'- ----cAGGCCGCGGAGaCGAcu-UGCc -3'
miRNA:   3'- guauuUCUGGUGCCUC-GCUuauAUGc -5'
24380 5' -45.4 NC_005264.1 + 37967 0.67 0.999964
Target:  5'- gAUAGGGcgauaACCGCGGccaGGCGAGUG-GCGg -3'
miRNA:   3'- gUAUUUC-----UGGUGCC---UCGCUUAUaUGC- -5'
24380 5' -45.4 NC_005264.1 + 38410 0.68 0.999879
Target:  5'- ---cGAGGCCGCGGAGCacgcgcucUGCGa -3'
miRNA:   3'- guauUUCUGGUGCCUCGcuuau---AUGC- -5'
24380 5' -45.4 NC_005264.1 + 39948 0.68 0.999951
Target:  5'- ---uGGGGCCACGGcgaccucggcuGCGAGUcUGCGg -3'
miRNA:   3'- guauUUCUGGUGCCu----------CGCUUAuAUGC- -5'
24380 5' -45.4 NC_005264.1 + 43309 0.67 0.999973
Target:  5'- ----uGGGCCACGGAGgGAGgagggaggaGCGg -3'
miRNA:   3'- guauuUCUGGUGCCUCgCUUaua------UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.