miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24380 5' -45.4 NC_005264.1 + 33909 0.68 0.999951
Target:  5'- --aGAAGACaugGCGGAGCGAGcccacACGa -3'
miRNA:   3'- guaUUUCUGg--UGCCUCGCUUaua--UGC- -5'
24380 5' -45.4 NC_005264.1 + 46596 0.68 0.999851
Target:  5'- --cGGAGGCUcugucccuGCGGGGCGAGg--ACGg -3'
miRNA:   3'- guaUUUCUGG--------UGCCUCGCUUauaUGC- -5'
24380 5' -45.4 NC_005264.1 + 146574 0.68 0.999851
Target:  5'- uCGUGAAGAUCgaugacaguguuGCGGGGUGGGcGUACa -3'
miRNA:   3'- -GUAUUUCUGG------------UGCCUCGCUUaUAUGc -5'
24380 5' -45.4 NC_005264.1 + 38410 0.68 0.999879
Target:  5'- ---cGAGGCCGCGGAGCacgcgcucUGCGa -3'
miRNA:   3'- guauUUCUGGUGCCUCGcuuau---AUGC- -5'
24380 5' -45.4 NC_005264.1 + 101111 0.68 0.999886
Target:  5'- aGUcuGGGCCACGGAGgCGAccuguUGCa -3'
miRNA:   3'- gUAuuUCUGGUGCCUC-GCUuau--AUGc -5'
24380 5' -45.4 NC_005264.1 + 152681 0.68 0.999886
Target:  5'- ---uGGGACCAagcgGGGGCGggUAUGa- -3'
miRNA:   3'- guauUUCUGGUg---CCUCGCuuAUAUgc -5'
24380 5' -45.4 NC_005264.1 + 33399 0.68 0.999934
Target:  5'- gAUGgcGACCGCGGugauguugGGCGAGUAcGCc -3'
miRNA:   3'- gUAUuuCUGGUGCC--------UCGCUUAUaUGc -5'
24380 5' -45.4 NC_005264.1 + 48777 0.68 0.999949
Target:  5'- aCAUAGAGugCaaggccgGCGGGGCGA----ACGa -3'
miRNA:   3'- -GUAUUUCugG-------UGCCUCGCUuauaUGC- -5'
24380 5' -45.4 NC_005264.1 + 158975 0.68 0.999951
Target:  5'- ---uGGGGCCACGGcgaccucggcuGCGAGUcUGCGg -3'
miRNA:   3'- guauUUCUGGUGCCu----------CGCUUAuAUGC- -5'
24380 5' -45.4 NC_005264.1 + 150598 0.69 0.999752
Target:  5'- aCGUGGAGgcGCCAgaggUGGGGCGAGUcUGCu -3'
miRNA:   3'- -GUAUUUC--UGGU----GCCUCGCUUAuAUGc -5'
24380 5' -45.4 NC_005264.1 + 28393 0.69 0.999683
Target:  5'- cCAUGccGAuCCugGGcGUGggUAUGCGu -3'
miRNA:   3'- -GUAUuuCU-GGugCCuCGCuuAUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 19959 0.69 0.999599
Target:  5'- gAUGGAGAaaggCGCGGcGCGAGUcgACGc -3'
miRNA:   3'- gUAUUUCUg---GUGCCuCGCUUAuaUGC- -5'
24380 5' -45.4 NC_005264.1 + 136332 0.78 0.907411
Target:  5'- --gAAAGACCGCGGGGagaGAuauUAUACGg -3'
miRNA:   3'- guaUUUCUGGUGCCUCg--CUu--AUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 123922 0.75 0.969895
Target:  5'- --cGGGGACCGCGGAGgCGAGcgacgaagAUGCGa -3'
miRNA:   3'- guaUUUCUGGUGCCUC-GCUUa-------UAUGC- -5'
24380 5' -45.4 NC_005264.1 + 17278 0.72 0.996998
Target:  5'- --cGGAGGCgACGGGGCGGAgg-GCu -3'
miRNA:   3'- guaUUUCUGgUGCCUCGCUUauaUGc -5'
24380 5' -45.4 NC_005264.1 + 76147 0.72 0.996998
Target:  5'- --cAAAGACCGCGcGcGGCGAGUA-ACGa -3'
miRNA:   3'- guaUUUCUGGUGC-C-UCGCUUAUaUGC- -5'
24380 5' -45.4 NC_005264.1 + 68013 0.71 0.997481
Target:  5'- aGUAAAG-CCGCGGAGCGccaaagaGCGg -3'
miRNA:   3'- gUAUUUCuGGUGCCUCGCuuaua--UGC- -5'
24380 5' -45.4 NC_005264.1 + 116546 0.7 0.99937
Target:  5'- -uUGGGGGCUACGGAgGCGGcgucgAUGCGc -3'
miRNA:   3'- guAUUUCUGGUGCCU-CGCUua---UAUGC- -5'
24380 5' -45.4 NC_005264.1 + 91892 0.7 0.99937
Target:  5'- gGUGGuuGGCCGCGGcAGCGAugg-GCGg -3'
miRNA:   3'- gUAUUu-CUGGUGCC-UCGCUuauaUGC- -5'
24380 5' -45.4 NC_005264.1 + 106970 0.7 0.999484
Target:  5'- aCGUGGAGGCCAUcgccaGGAGCcgcauagacgccuGGAUAUAUGc -3'
miRNA:   3'- -GUAUUUCUGGUG-----CCUCG-------------CUUAUAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.