miRNA display CGI


Results 21 - 40 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 139042 0.77 0.568381
Target:  5'- gCGCGCGAUGAACGcuucagcUCGCGgaGGCGCCg -3'
miRNA:   3'- aGUGUGCUGUUUGC-------AGUGCg-UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 56397 0.77 0.569403
Target:  5'- -gGCGCGACGAuCGcauaucgaGCGCGGCGCCg -3'
miRNA:   3'- agUGUGCUGUUuGCag------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 74136 0.77 0.569403
Target:  5'- cUCAUGCGGCAugcACGcCACGCAGCuGCUu -3'
miRNA:   3'- -AGUGUGCUGUu--UGCaGUGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 48354 0.77 0.569403
Target:  5'- aCGcCAUGGCGGccuCGUUGCGCAGUGCCg -3'
miRNA:   3'- aGU-GUGCUGUUu--GCAGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 49845 0.77 0.588903
Target:  5'- -aACACGGCAccggggcccugguGACGcCGCGCAGCGUa -3'
miRNA:   3'- agUGUGCUGU-------------UUGCaGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 76247 0.77 0.589933
Target:  5'- -gGCGCGACGAccGCGugucUCACGCAGauCGCCa -3'
miRNA:   3'- agUGUGCUGUU--UGC----AGUGCGUC--GCGG- -5'
24382 3' -52.3 NC_005264.1 + 26363 0.77 0.589933
Target:  5'- gCGcCGCGGCAGGCu--GCGCGGCGCCg -3'
miRNA:   3'- aGU-GUGCUGUUUGcagUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 129281 0.76 0.609554
Target:  5'- cUCGCGCGcaAUAAACGaacuuacgcuuauUCGCgGCAGCGCCg -3'
miRNA:   3'- -AGUGUGC--UGUUUGC-------------AGUG-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 111578 0.76 0.611624
Target:  5'- aCGCGCGACAGAUGUUccgcgauuccugaacCGCGGCGCg -3'
miRNA:   3'- aGUGUGCUGUUUGCAGu--------------GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 115944 0.76 0.620946
Target:  5'- aCACGCGGCGcaGGCuaggaggUACGCGGCGCCc -3'
miRNA:   3'- aGUGUGCUGU--UUGca-----GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 154199 0.76 0.620946
Target:  5'- uUCGCGCGAaacgUAGACGUgGCGgugaAGCGCCu -3'
miRNA:   3'- -AGUGUGCU----GUUUGCAgUGCg---UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 81931 0.76 0.631311
Target:  5'- gUCGCGuaguCGGCGguugucccuccGGCGUCAUGCAuGCGCCa -3'
miRNA:   3'- -AGUGU----GCUGU-----------UUGCAGUGCGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 129904 0.76 0.641677
Target:  5'- -aACAU-ACAGAC-UCACGCGGCGCCc -3'
miRNA:   3'- agUGUGcUGUUUGcAGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 84916 0.75 0.661344
Target:  5'- gCugGCGACGAugGcugCGCGCucuguuguaguguGGCGCCg -3'
miRNA:   3'- aGugUGCUGUUugCa--GUGCG-------------UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 66599 0.75 0.672694
Target:  5'- cUCGCugGGCu-GCGcCGCGUugccGGCGCCg -3'
miRNA:   3'- -AGUGugCUGuuUGCaGUGCG----UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 40179 0.75 0.682977
Target:  5'- cCAuCGCGACGAAUGUCA-GC-GCGCCc -3'
miRNA:   3'- aGU-GUGCUGUUUGCAGUgCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 38178 0.75 0.682977
Target:  5'- cCGCGCugugggGACAccuAGCGUCGCGCGGC-CCg -3'
miRNA:   3'- aGUGUG------CUGU---UUGCAGUGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 159206 0.75 0.682977
Target:  5'- cCAuCGCGACGAAUGUCA-GC-GCGCCc -3'
miRNA:   3'- aGU-GUGCUGUUUGCAGUgCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 157205 0.75 0.682977
Target:  5'- cCGCGCugugggGACAccuAGCGUCGCGCGGC-CCg -3'
miRNA:   3'- aGUGUG------CUGU---UUGCAGUGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 11993 0.75 0.693217
Target:  5'- -gGCACGGCAGaguacGCGUCACgaccugcgGCGGCGaCCg -3'
miRNA:   3'- agUGUGCUGUU-----UGCAGUG--------CGUCGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.