miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 5' -57.6 NC_005264.1 + 118038 0.66 0.860566
Target:  5'- aUGGaGGUuuGCCGCgGCGaCCGCGGCGu- -3'
miRNA:   3'- aACC-CCA--UGGCG-UGCaGGUGCUGUca -5'
24382 5' -57.6 NC_005264.1 + 100501 0.66 0.859808
Target:  5'- -aGGGGUugCGgGCGaaagCCcucauagACGACAGg -3'
miRNA:   3'- aaCCCCAugGCgUGCa---GG-------UGCUGUCa -5'
24382 5' -57.6 NC_005264.1 + 111525 0.66 0.852889
Target:  5'- -cGGGGUacaaguggcacGCCG-ACGUgCACGAgGGUg -3'
miRNA:   3'- aaCCCCA-----------UGGCgUGCAgGUGCUgUCA- -5'
24382 5' -57.6 NC_005264.1 + 152387 0.66 0.852889
Target:  5'- -cGGcGGUcacuCUGCccuCGUCUACGACAGg -3'
miRNA:   3'- aaCC-CCAu---GGCGu--GCAGGUGCUGUCa -5'
24382 5' -57.6 NC_005264.1 + 45411 0.66 0.845015
Target:  5'- -gGGcGGcGCCcuGCGCG-CCGCGACAGc -3'
miRNA:   3'- aaCC-CCaUGG--CGUGCaGGUGCUGUCa -5'
24382 5' -57.6 NC_005264.1 + 32926 0.66 0.83695
Target:  5'- -aGGGGUcGCgGgGCG-CCGCGugAGUc -3'
miRNA:   3'- aaCCCCA-UGgCgUGCaGGUGCugUCA- -5'
24382 5' -57.6 NC_005264.1 + 91173 0.67 0.82028
Target:  5'- -cGGGGUGCagcaaacacgUGUACG-CCACGcACAGg -3'
miRNA:   3'- aaCCCCAUG----------GCGUGCaGGUGC-UGUCa -5'
24382 5' -57.6 NC_005264.1 + 137859 0.67 0.811689
Target:  5'- -gGGGGUacggggacaACCGCAgGUCuCGCGGgAGc -3'
miRNA:   3'- aaCCCCA---------UGGCGUgCAG-GUGCUgUCa -5'
24382 5' -57.6 NC_005264.1 + 28294 0.67 0.77488
Target:  5'- -cGGGGUACUuggccuucugcggGCGCGUCUuugaguaucuuuGCGGCGGc -3'
miRNA:   3'- aaCCCCAUGG-------------CGUGCAGG------------UGCUGUCa -5'
24382 5' -57.6 NC_005264.1 + 23016 0.68 0.766497
Target:  5'- uUUGcGGGUACgCGUuuCGUcCCGCGACGGc -3'
miRNA:   3'- -AAC-CCCAUG-GCGu-GCA-GGUGCUGUCa -5'
24382 5' -57.6 NC_005264.1 + 25542 0.68 0.763681
Target:  5'- --uGGGUGCCGUACGcCCGCGucgccgccaacgccGCGGa -3'
miRNA:   3'- aacCCCAUGGCGUGCaGGUGC--------------UGUCa -5'
24382 5' -57.6 NC_005264.1 + 51539 0.69 0.708494
Target:  5'- cUUGGGGUACUugaacuugccgaGCACGgCCugGACGu- -3'
miRNA:   3'- -AACCCCAUGG------------CGUGCaGGugCUGUca -5'
24382 5' -57.6 NC_005264.1 + 133445 0.69 0.708494
Target:  5'- -cGGcGGUGCCGCACGcUUACGGCu-- -3'
miRNA:   3'- aaCC-CCAUGGCGUGCaGGUGCUGuca -5'
24382 5' -57.6 NC_005264.1 + 53157 0.69 0.688555
Target:  5'- -cGGcGGUACUGCuCGUCUugGGCgAGUu -3'
miRNA:   3'- aaCC-CCAUGGCGuGCAGGugCUG-UCA- -5'
24382 5' -57.6 NC_005264.1 + 4508 0.69 0.678512
Target:  5'- -aGGGGggACUGgGCGUCCGCGGaGGg -3'
miRNA:   3'- aaCCCCa-UGGCgUGCAGGUGCUgUCa -5'
24382 5' -57.6 NC_005264.1 + 123535 0.69 0.678512
Target:  5'- -aGGGGggACUGgGCGUCCGCGGaGGg -3'
miRNA:   3'- aaCCCCa-UGGCgUGCAGGUGCUgUCa -5'
24382 5' -57.6 NC_005264.1 + 76247 0.69 0.668432
Target:  5'- cUUGGGuGUggaGCCGUgacuGCGgucgCCACGGCAGUc -3'
miRNA:   3'- -AACCC-CA---UGGCG----UGCa---GGUGCUGUCA- -5'
24382 5' -57.6 NC_005264.1 + 48339 0.7 0.648193
Target:  5'- cUGGGGaguUGgCGCACG-CCAUGGCGGc -3'
miRNA:   3'- aACCCC---AUgGCGUGCaGGUGCUGUCa -5'
24382 5' -57.6 NC_005264.1 + 116205 0.7 0.647179
Target:  5'- -cGGGGaUGCCGaauucuucggccaCGCGgucCCACGACGGUg -3'
miRNA:   3'- aaCCCC-AUGGC-------------GUGCa--GGUGCUGUCA- -5'
24382 5' -57.6 NC_005264.1 + 116488 0.72 0.52777
Target:  5'- -cGGGGaUACCGCGgGUCCugGAauCGGc -3'
miRNA:   3'- aaCCCC-AUGGCGUgCAGGugCU--GUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.