miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24383 3' -64.3 NC_005264.1 + 121742 1 0.002709
Target:  5'- aGGGGCGCCGCCCUC-AGGCCCUAGUCu -3'
miRNA:   3'- -CCCCGCGGCGGGAGcUCCGGGAUCAG- -5'
24383 3' -64.3 NC_005264.1 + 86437 0.74 0.203643
Target:  5'- cGGGCGCCcuaugugccacGCCCUCGAGGCgaacaCgUGGUUa -3'
miRNA:   3'- cCCCGCGG-----------CGGGAGCUCCG-----GgAUCAG- -5'
24383 3' -64.3 NC_005264.1 + 32095 0.73 0.22344
Target:  5'- gGGGGCGCCGCCCcaUCGAuGCaaaUUAuGUCa -3'
miRNA:   3'- -CCCCGCGGCGGG--AGCUcCGg--GAU-CAG- -5'
24383 3' -64.3 NC_005264.1 + 151122 0.73 0.22344
Target:  5'- gGGGGCGCCGCCCcaUCGAuGCaaaUUAuGUCa -3'
miRNA:   3'- -CCCCGCGGCGGG--AGCUcCGg--GAU-CAG- -5'
24383 3' -64.3 NC_005264.1 + 87697 0.72 0.25046
Target:  5'- -uGGCGUgGCCCUcguggaugcCGAGGCCUUGGUg -3'
miRNA:   3'- ccCCGCGgCGGGA---------GCUCCGGGAUCAg -5'
24383 3' -64.3 NC_005264.1 + 10537 0.72 0.256177
Target:  5'- -cGGCGCCGCCCUCaGGGGCgCggaUCg -3'
miRNA:   3'- ccCCGCGGCGGGAG-CUCCGgGaucAG- -5'
24383 3' -64.3 NC_005264.1 + 129564 0.72 0.256177
Target:  5'- -cGGCGCCGCCCUCaGGGGCgCggaUCg -3'
miRNA:   3'- ccCCGCGGCGGGAG-CUCCGgGaucAG- -5'
24383 3' -64.3 NC_005264.1 + 128540 0.71 0.286376
Target:  5'- aGGcGCGgCGCCCUCGAggGGCCCUcGa- -3'
miRNA:   3'- cCC-CGCgGCGGGAGCU--CCGGGAuCag -5'
24383 3' -64.3 NC_005264.1 + 9513 0.71 0.286376
Target:  5'- aGGcGCGgCGCCCUCGAggGGCCCUcGa- -3'
miRNA:   3'- cCC-CGCgGCGGGAGCU--CCGGGAuCag -5'
24383 3' -64.3 NC_005264.1 + 41059 0.71 0.299219
Target:  5'- uGGGCGCCGUCCUUG-GGUCauguGUCc -3'
miRNA:   3'- cCCCGCGGCGGGAGCuCCGGgau-CAG- -5'
24383 3' -64.3 NC_005264.1 + 3750 0.71 0.305805
Target:  5'- cGGGGCcucuuGCCGCCggggCGcugcGGGCCCUuGGUCg -3'
miRNA:   3'- -CCCCG-----CGGCGGga--GC----UCCGGGA-UCAG- -5'
24383 3' -64.3 NC_005264.1 + 122776 0.71 0.305805
Target:  5'- cGGGGCcucuuGCCGCCggggCGcugcGGGCCCUuGGUCg -3'
miRNA:   3'- -CCCCG-----CGGCGGga--GC----UCCGGGA-UCAG- -5'
24383 3' -64.3 NC_005264.1 + 18642 0.7 0.346189
Target:  5'- uGGGGUGCCGCCCaccguaugcuaaUGAGGUCacaUGGUg -3'
miRNA:   3'- -CCCCGCGGCGGGa-----------GCUCCGGg--AUCAg -5'
24383 3' -64.3 NC_005264.1 + 143992 0.7 0.355008
Target:  5'- gGGGGUGCCGCCCccUCGAuGCaaaugaGGUCa -3'
miRNA:   3'- -CCCCGCGGCGGG--AGCUcCGgga---UCAG- -5'
24383 3' -64.3 NC_005264.1 + 5148 0.69 0.362476
Target:  5'- gGGGGCGUCGCCgUCGucgucggugccGGCCUc-GUCg -3'
miRNA:   3'- -CCCCGCGGCGGgAGCu----------CCGGGauCAG- -5'
24383 3' -64.3 NC_005264.1 + 124175 0.69 0.362476
Target:  5'- gGGGGCGUCGCCgUCGucgucggugccGGCCUc-GUCg -3'
miRNA:   3'- -CCCCGCGGCGGgAGCu----------CCGGGauCAG- -5'
24383 3' -64.3 NC_005264.1 + 86977 0.69 0.377738
Target:  5'- gGGGGCGUaagcgCGCCUUCaaGGGGCC--AGUCa -3'
miRNA:   3'- -CCCCGCG-----GCGGGAG--CUCCGGgaUCAG- -5'
24383 3' -64.3 NC_005264.1 + 93245 0.69 0.393426
Target:  5'- cGGGCGgCGCCCUCGucGGCgcguucgcgcaaCCUgaauaGGUCg -3'
miRNA:   3'- cCCCGCgGCGGGAGCu-CCG------------GGA-----UCAG- -5'
24383 3' -64.3 NC_005264.1 + 6484 0.69 0.401427
Target:  5'- cGGGGUGCgCGgCCaUCGAGGgCCgguagccGGUCu -3'
miRNA:   3'- -CCCCGCG-GCgGG-AGCUCCgGGa------UCAG- -5'
24383 3' -64.3 NC_005264.1 + 125511 0.69 0.401427
Target:  5'- cGGGGUGCgCGgCCaUCGAGGgCCgguagccGGUCu -3'
miRNA:   3'- -CCCCGCG-GCgGG-AGCUCCgGGa------UCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.