Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24383 | 3' | -64.3 | NC_005264.1 | + | 151122 | 0.73 | 0.22344 |
Target: 5'- gGGGGCGCCGCCCcaUCGAuGCaaaUUAuGUCa -3' miRNA: 3'- -CCCCGCGGCGGG--AGCUcCGg--GAU-CAG- -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 60321 | 0.67 | 0.477827 |
Target: 5'- cGGGGCGUaugggaucguCGagaUCUUGAGGCCCUcGUa -3' miRNA: 3'- -CCCCGCG----------GCg--GGAGCUCCGGGAuCAg -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 67763 | 0.67 | 0.495774 |
Target: 5'- aGGGCGUCGCUUaUCGccAGGCCCaucauGUCu -3' miRNA: 3'- cCCCGCGGCGGG-AGC--UCCGGGau---CAG- -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 94683 | 0.67 | 0.514019 |
Target: 5'- cGGGCGCCGCaacgUUCacauaacGGCCgUGGUCa -3' miRNA: 3'- cCCCGCGGCGg---GAGcu-----CCGGgAUCAG- -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 130104 | 0.66 | 0.53067 |
Target: 5'- cGGGUGCCGCCCccucaaugcaaaUGAGGUCacaUGGUa -3' miRNA: 3'- cCCCGCGGCGGGa-----------GCUCCGGg--AUCAg -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 159225 | 0.66 | 0.532533 |
Target: 5'- --cGCGcCCGCCCUCGcGGCCCc---- -3' miRNA: 3'- cccCGC-GGCGGGAGCuCCGGGaucag -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 69607 | 0.66 | 0.540942 |
Target: 5'- aGGGCGCCGCCCggCGugagaacgacAGGCUauuggggCUGGg- -3' miRNA: 3'- cCCCGCGGCGGGa-GC----------UCCGG-------GAUCag -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 3447 | 0.66 | 0.570223 |
Target: 5'- aGGGGUccGCCGCCCgUGGcGCCC-GGUg -3' miRNA: 3'- -CCCCG--CGGCGGGaGCUcCGGGaUCAg -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 18528 | 0.66 | 0.579755 |
Target: 5'- gGGGGCGCCGucuccCCCUgaGGGcGCgCCggcGUCa -3' miRNA: 3'- -CCCCGCGGC-----GGGAg-CUC-CG-GGau-CAG- -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 126609 | 0.69 | 0.408716 |
Target: 5'- -cGGCuCCGCCCcuaaaccUCGcGGGCUCUGGUCu -3' miRNA: 3'- ccCCGcGGCGGG-------AGC-UCCGGGAUCAG- -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 125511 | 0.69 | 0.401427 |
Target: 5'- cGGGGUGCgCGgCCaUCGAGGgCCgguagccGGUCu -3' miRNA: 3'- -CCCCGCG-GCgGG-AGCUCCgGGa------UCAG- -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 87697 | 0.72 | 0.25046 |
Target: 5'- -uGGCGUgGCCCUcguggaugcCGAGGCCUUGGUg -3' miRNA: 3'- ccCCGCGgCGGGA---------GCUCCGGGAUCAg -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 129564 | 0.72 | 0.256177 |
Target: 5'- -cGGCGCCGCCCUCaGGGGCgCggaUCg -3' miRNA: 3'- ccCCGCGGCGGGAG-CUCCGgGaucAG- -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 128540 | 0.71 | 0.286376 |
Target: 5'- aGGcGCGgCGCCCUCGAggGGCCCUcGa- -3' miRNA: 3'- cCC-CGCgGCGGGAGCU--CCGGGAuCag -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 41059 | 0.71 | 0.299219 |
Target: 5'- uGGGCGCCGUCCUUG-GGUCauguGUCc -3' miRNA: 3'- cCCCGCGGCGGGAGCuCCGGgau-CAG- -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 122776 | 0.71 | 0.305805 |
Target: 5'- cGGGGCcucuuGCCGCCggggCGcugcGGGCCCUuGGUCg -3' miRNA: 3'- -CCCCG-----CGGCGGga--GC----UCCGGGA-UCAG- -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 18642 | 0.7 | 0.346189 |
Target: 5'- uGGGGUGCCGCCCaccguaugcuaaUGAGGUCacaUGGUg -3' miRNA: 3'- -CCCCGCGGCGGGa-----------GCUCCGGg--AUCAg -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 124175 | 0.69 | 0.362476 |
Target: 5'- gGGGGCGUCGCCgUCGucgucggugccGGCCUc-GUCg -3' miRNA: 3'- -CCCCGCGGCGGgAGCu----------CCGGGauCAG- -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 71105 | 0.69 | 0.401427 |
Target: 5'- ----aGCCGCCCUC--GGCCCUGGUg -3' miRNA: 3'- ccccgCGGCGGGAGcuCCGGGAUCAg -5' |
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24383 | 3' | -64.3 | NC_005264.1 | + | 121742 | 1 | 0.002709 |
Target: 5'- aGGGGCGCCGCCCUC-AGGCCCUAGUCu -3' miRNA: 3'- -CCCCGCGGCGGGAGcUCCGGGAUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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